mRNA_H-elongata_contig190165.5243.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 139 bits (351), Expect = 2.630e-36 Identity = 89/203 (43.84%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSG-ECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ R +G+QETRR+G F AG+ V+C G E G G GVG+A++ S+ + + EFI + L+ + L G AV F AYAPTE A +K FW LD R E + VLMD NARTG R G G +++G YGRD LNDNG LL +FA + LAL NT
Sbjct: 116 ATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETG-------GVHGVGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDGGDG----RVIGMYGRDELNDNGMLLLNFATGNRLALTNT 307
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 140 bits (352), Expect = 6.550e-35 Identity = 90/203 (44.33%), Postives = 117/203 (57.64%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSG-ECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV G +G GRA L+ R +G+QETRR+G F AG+ V+C G E G G GVG+A++ S+ + + EFI +RL+ + L L G AV F A APTE AS+K FW LD R E ++VL+D NARTG R G G +++G YGRD LNDNG LL +FA + LAL NT
Sbjct: 61 ATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETG-------GVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGGDG----RVIGMYGRDELNDNGMLLLNFATENRLALTNT 252
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.230e-34 Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ + G +GLQE RR G F +G+ V+ CG G GVG+A+ ++ ++++ E++ +RL+ + E+ G AVTF AYAPT+ +KH FW LD R E LFVLMD NA+TG G + ++ + +G YGR+ LNDNG LL +FA ++ LA++NT
Sbjct: 77 ATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKG---GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFATDNRLAVLNT 268
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.370e-34 Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ + G +GLQE RR G F +G+ V+ CG G GVG+A+ ++ ++++ E++ +RL+ + E+ G AVTF AYAPT+ +KH FW LD R E LFVLMD NA+TG G + ++ +G YGR+ LN+NGELL +FA ++ LA++NT
Sbjct: 22 ATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKG---GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLNT 213
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.710e-34 Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ + G +GLQE RR G F +G+ V+ CG G GVG+A+ ++ ++++ E++ +RL+ + E+ G AVTF AYAPT+ +KH FW LD R E LFVLMD NA+TG G + ++ +G YGR+ LN+NGELL +FA ++ LA++NT
Sbjct: 513 ATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKG---GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLNT 704
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 135 bits (341), Expect = 9.960e-34 Identity = 90/211 (42.65%), Postives = 120/211 (56.87%), Query Frame = 1
Query: 4 TQDVRTMAVDGKHGVGR-ALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASN------KHTFWTSLDRAMEH----EQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
T +VRT+A G++ +G + + + G D IGLQETRR+G + GY + SG +G GVG+AI+ S+ R E IS RL+KV L++ GR VTF V YAPTET + K +FWT+LD A+ + L VLMD NARTGRR KG D KI+GAYGRD +N+NGE L A+++ L+L NT
Sbjct: 179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG-ARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNT 384
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.170e-33 Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ + G +GLQE RR G F +G+ V+ CG G GVG+A+ ++ ++++ E++ +RL+ + E+ G AVTF AYAPT+ +KH FW LD R E LFVLMD NA+TG G + ++ +G YGR+ LN+NGELL +FA ++ LA++NT
Sbjct: 309 ATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFT---CGTDKG---GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLNT 500
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 130 bits (328), Expect = 3.730e-33 Identity = 87/211 (41.23%), Postives = 115/211 (54.50%), Query Frame = 1
Query: 4 TQDVRTMAVDGKHGVGR-ALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASN------KHTFWTSLDRAME----HEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
T +VRT+A G++ +G + + + G D IGLQETRR G + GY + SG +G GVG+AI+ S+ R E I RL+KV L + GR +TF V YAPTET + K +FWT+LD + H+ L VLMD NARTGRR G D KI+G YGRD +N+NGE L A+N+ L+L NT
Sbjct: 152 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSG-ARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCC---DAKIMGVYGRDIMNNNGERLLGLASNNQLSLTNT 357
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.230e-32 Identity = 80/202 (39.60%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 1 ATQDVRTMAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRTSITRAAR-PPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQNASNKHTFWTSLD----RAMEHEQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
AT +VRT+AV+G +G GRA L+ + +GLQE RR G F +G+ V+ CG G GVG+A+ ++ +A++ E++ +RL+ + E+ G AV F AYAPT+ A +K FW LD R E LFVLMD NA+TG G + ++ + +G YGR+ LNDNG LL +FA ++ LA++NT
Sbjct: 47 ATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFT---CGTDKG---GTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFATDNRLAVLNT 238
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.640e-32 Identity = 89/211 (42.18%), Postives = 120/211 (56.87%), Query Frame = 1
Query: 4 TQDVRTMAVDGKHGVGR-ALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSGECGXXXXXXKGQGGVGLAIRT----SITRAARPPEFISDRLLKVTLELRGRVKAVTFFVAYAPTETQ------NASNKHTFWTSLDRAMEH----EQLFVLMDVNARTGRREKGQVGSKDLKILGAYGRDTLNDNGELLPSFANNHDLALVNT 591
T +VRT+A G++ +G + + + G D IGLQETRR+G + GY + SG +G GVG+AI+ S+ R E IS RL+KV L++ GR VTF V YAPTET + + K +FWT+LD A+ + L VLMD NARTGRR G D KI+GAYGRD +N+NGE L A+++ L+L NT
Sbjct: 90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSG-ARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNT 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190165.5243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig190165.5243.1 >prot_H-elongata_contig190165.5243.1 ID=prot_H-elongata_contig190165.5243.1|Name=mRNA_H-elongata_contig190165.5243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MAVDGKHGVGRALDDLNVYDRLGYDAIGLQETRRSGHPAFNQAGYSVYCSback to top mRNA from alignment at H-elongata_contig190165:589..1191+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig190165.5243.1 ID=mRNA_H-elongata_contig190165.5243.1|Name=mRNA_H-elongata_contig190165.5243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig190165:589..1191+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig190165:589..1191+ >mRNA_H-elongata_contig190165.5243.1 ID=mRNA_H-elongata_contig190165.5243.1|Name=mRNA_H-elongata_contig190165.5243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig190165:589..1191+ (Himanthalia elongata Himel1 dioecious)back to top |