mRNA_H-elongata_contig19011.5240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19011.5240.1
Unique NamemRNA_H-elongata_contig19011.5240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19011.5240.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 5.280e-19
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:  202 AFPCSARRHSHLPASGNSSDGEKSAAPPSDTSSSVDAVTASLVEAAGNVTPPGSEGEEIGATAVDLAKGISFETPKPKDGEVEEDGDGSEAKKLRVILYTVLSLVPFLLLIPFLGGRDLVPLDPNQM 582
            A P   R  S L ASG +  GE+  A PS+ S +  +  A+  E  G            G + VDL+KGI+FE PKPK  E E+  + S++KK+RVI+YTVLSLVPF+LL+PFLGGR+L+PLDP+QM
Sbjct:   76 AVPSLDRWQSRLGASGETL-GEEGIANPSEESEATSSGGATNSEPGG------------GGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19011.5240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ2_ECTSI5.280e-1948.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19011contigH-elongata_contig19011:1736..4398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002700.1
Exons2
Model size1802
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19011.5240.1prot_H-elongata_contig19011.5240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19011 1886..3181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.064647-UTR-H-elongata_contig19011:1735..18851622930087.064647-UTR-H-elongata_contig19011:1735..1885Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19011 1736..1885 +
1691679275.4927318-UTR-H-elongata_contig19011:1735..18851691679275.4927318-UTR-H-elongata_contig19011:1735..1885Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19011 1736..1885 +
1622930087.097783-UTR-H-elongata_contig19011:3181..43981622930087.097783-UTR-H-elongata_contig19011:3181..4398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19011 3182..4398 +
1691679275.52987-UTR-H-elongata_contig19011:3181..43981691679275.52987-UTR-H-elongata_contig19011:3181..4398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19011 3182..4398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.078762-CDS-H-elongata_contig19011:1885..22151622930087.078762-CDS-H-elongata_contig19011:1885..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19011 1886..2215 +
1691679275.5059621-CDS-H-elongata_contig19011:1885..22151691679275.5059621-CDS-H-elongata_contig19011:1885..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19011 1886..2215 +
1622930087.0879028-CDS-H-elongata_contig19011:3076..31811622930087.0879028-CDS-H-elongata_contig19011:3076..3181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19011 3077..3181 +
1691679275.519493-CDS-H-elongata_contig19011:3076..31811691679275.519493-CDS-H-elongata_contig19011:3076..3181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19011 3077..3181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19011.5240.1

>prot_H-elongata_contig19011.5240.1 ID=prot_H-elongata_contig19011.5240.1|Name=mRNA_H-elongata_contig19011.5240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MDMTNLAGGVVLKKNRLAFPCSARRHSHLPASGNSSDGEKSAAPPSDTSS
SVDAVTASLVEAAGNVTPPGSEGEEIGATAVDLAKGISFETPKPKDGEVE
EDGDGSEAKKLRVILYTVLSLVPFLLLIPFLGGRDLVPLDPNQM*
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mRNA from alignment at H-elongata_contig19011:1736..4398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19011.5240.1 ID=mRNA_H-elongata_contig19011.5240.1|Name=mRNA_H-elongata_contig19011.5240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2663bp|location=Sequence derived from alignment at H-elongata_contig19011:1736..4398+ (Himanthalia elongata Himel1 dioecious)
TTTCTCTTGGTCACCGTACGACTCTCGCTCTCGCTCACGCTCTCATTCCT
CGTAGCGTCGTGTTCCCACCCCGCGTTCAAGGCTTTGCAGCATGTTTATC
ACGAGCGCCAGCAGACAGCTTCCGCCGCAGGGATACAGCCTCAGCCCACC
ATGGACATGACCAACCTTGCGGGTGGTGTTGTACTAAAAAAAAACAGACT
CGCCTTTCCGTGCAGCGCGCGGCGGCACTCACACCTCCCAGCCTCGGGAA
ATAGCTCGGACGGGGAGAAAAGCGCCGCACCTCCGTCAGATACTTCTTCA
TCTGTCGATGCGGTAACCGCTTCGCTAGTTGAAGCCGCAGGTAATGTGAC
CCCACCCGGTAGCGAGGGAGAAGAAATCGGAGCGACAGCGGTTGACTTGG
CTAAGGGGATATCATTCGAGACGCCAAAGCCGAAGGACGGGGAGGTTGAA
GAGGATGGTGACGGGTCGGAGGCAAAGAAGGTGACAGTCCCGCGTCTGTT
TTTTTATTAGGAACTGTGAGCAGTACGTTTCTGCTCTGTTGTAGTTTTGT
TTCTAATTTTATTTTAAAACATATGGACTCATTAAAACCCTCCGAACATC
CACCACGCCTTCTTAGCACCATGAGAGGTATAGTCCAGGGACCAACTATC
GTTCGGTTCAAATGTAGACATTACTACATTTAAGCACAAAATCGTCATAT
AACAGATATGTGGTTATTCGTGTTCACCGGTGGTAAATGCATCAGGTCGA
CGGTCAATGTCGGGGATCCCACCATTGTCCCGTACACTTTCATTTATTCA
TTATATAGGGACTATGACGCCAAACCAGAGTACTATAGTATAGTCTAGAG
AGTGAACTATGGTGGTTAGGAAGAGTTAATAATAGTTATTACATCTTTGC
ATTGTTGATACGTCTCGAATAATTTTGAATTGTAGCTATTAAATTGTTTA
TCGTAGTACAGAAGGTCAGAGCTAACGAACCTGCTCTGTGCTTCAAGTTT
GATTTATCGCATTTTTCTTTGAAAACATATGGCCAGCATTGAGTTGACTC
AATGCTACGGCTCGTACCCTACTCAGTTGGTCGTCCTCATCTCTCACCCA
CGAGGGAGTCTCCATGATACGTGGTCCTCGATGTCATTGGATTCGTTCTT
CATCACGGATCGGTATGGTAGACACATAAGAAAGAAGAGGAAATAAATCC
ATCCCCGACGACACAACTCCAAATCTAACGATTATTTGTGCGGCGTTTAC
CATTCTCGCCAAGCCTTCTACTTCAGACTATTAATAATATCTACCCGATC
CGTGCTCTGATTGCATCCATTCGTCGCCTCTGCACGCGCAGCTTCGCGTG
ATCCTGTATACGGTGCTCTCCCTGGTGCCGTTTCTTCTCCTCATCCCCTT
CCTTGGGGGAAGAGACCTGGTACCCCTTGATCCGAACCAGATGTAGAAAA
TGGAATGTTCTGGGGACTGTTCGGGGCAGAGCAGCATGGGTGCTACATGA
TCACGGCATGTTTTGTTTTTTTTCAACATGTGTACGTACTGCTCTGCGTC
GAGCTATTTACTCTTCGTGGTTGTGAGTTATTATGGCCCTAGGTGACGAA
ATGGCCCTAGGTCACGAAACATACGCCCATGTAATACATATCATCAGTAT
TATTTTTGAAAAACATATGAACTCATTGAAACCCTCCGAACGTCCCCACC
TTCTTAGCACACCATGAGCGGTGAAGTCCAAGGGACTATGACCAACTATC
GTTTGGTTCGAATGTGGACATTACTGCCTACGAGCACAAACTCGTCGCAC
GTGATTAATCGTGTTCCCCAATGATAATTACATCGGGTCAACACTATTAA
TAGTATAATGTAGTATAATGGTATAATGTCGGGGAGAAACCCACCTTTAC
ACTGCCCTCTTATATTATTCATCATGATGACGTCATGTGGGGACGCCAAA
CCAGAGTGAGCCTAGAGAGTGGGCAGATAAAGAGGAGGCGGGGGTTCATA
AAATTATTTTTTCTGCCTTGTTGGGTATATGAAAATTAGGGATGTTGGTA
AAGGGGTTAGAAATAAATAGTAATGTGCAACATCAGTCTTATTACCATTT
TTACTACAAAACACTTGCGTACGGTTCCAAGGTCGGAGTACAAAGTAAGG
CGCTGCACTCGGCGTGGGCGTGGGCTGAACACCTTGCCCAAGGCATTCCA
ACCTGTCTAATCTCCTCCCGTACGATTCCTCCCTCGTCAAACGTCCGGTT
TACTTTTTTCTCCCCGAGCGGAACTATATCCCGGTCTCTCCCATTAAACG
GCGGGATCGATTGGGTGATTGCCAAAATTACGGAGACGAGCGCGGAGGTA
TTTTCAATGAAGAGTAGTAGACAACTGATAGTGTTGCACTCGATCTGTTA
TCAATAGTAGCGATCTAGACGGTAACCACGAGCGATGCACCCCTGGAACG
AGCGAGAGCCTTCTTCGCGTATACACATCGTTTTATCGGTCTCTAAAAAA
GTCTACTCGATACTGTTTGTTGTACGTGCTTCGTCTTACGTTCGAACTTT
TTTTTCCTTGCTGTTTATTCGGCGATTGGTATTCCCCCCGTCCCGGACGG
GATTGATGCGTTTTCACGGTAATCCTGTTGTGTTTGTGTGTTGTAATTCT
AGTTATTCTGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig19011:1736..4398+

>mRNA_H-elongata_contig19011.5240.1 ID=mRNA_H-elongata_contig19011.5240.1|Name=mRNA_H-elongata_contig19011.5240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig19011:1736..4398+ (Himanthalia elongata Himel1 dioecious)
ATGGACATGACCAACCTTGCGGGTGGTGTTGTACTAAAAAAAAACAGACT
CGCCTTTCCGTGCAGCGCGCGGCGGCACTCACACCTCCCAGCCTCGGGAA
ATAGCTCGGACGGGGAGAAAAGCGCCGCACCTCCGTCAGATACTTCTTCA
TCTGTCGATGCGGTAACCGCTTCGCTAGTTGAAGCCGCAGGTAATGTGAC
CCCACCCGGTAGCGAGGGAGAAGAAATCGGAGCGACAGCGGTTGACTTGG
CTAAGGGGATATCATTCGAGACGCCAAAGCCGAAGGACGGGGAGGTTGAA
GAGGATGGTGACGGGTCGGAGGCAAAGAAGATGGACATGACCAACCTTGC
GGGTGGTGTTGTACTAAAAAAAAACAGACTCGCCTTTCCGTGCAGCGCGC
GGCGGCACTCACACCTCCCAGCCTCGGGAAATAGCTCGGACGGGGAGAAA
AGCGCCGCACCTCCGTCAGATACTTCTTCATCTGTCGATGCGGTAACCGC
TTCGCTAGTTGAAGCCGCAGGTAATGTGACCCCACCCGGTAGCGAGGGAG
AAGAAATCGGAGCGACAGCGGTTGACTTGGCTAAGGGGATATCATTCGAG
ACGCCAAAGCCGAAGGACGGGGAGGTTGAAGAGGATGGTGACGGGTCGGA
GGCAAAGAAGCTTCGCGTGATCCTGTATACGGTGCTCTCCCTGGTGCCGT
TTCTTCTCCTCATCCCCTTCCTTGGGGGAAGAGACCTGGTACCCCTTGAT
CCGAACCAGATGTAGCTTCGCGTGATCCTGTATACGGTGCTCTCCCTGGT
GCCGTTTCTTCTCCTCATCCCCTTCCTTGGGGGAAGAGACCTGGTACCCC
TTGATCCGAACCAGATGTAG
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