prot_H-elongata_contig19011.5240.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19011.5240.1
Unique Nameprot_H-elongata_contig19011.5240.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
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BLAST of mRNA_H-elongata_contig19011.5240.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.960e-22
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 0 
Query:   18 AFPCSARRHSHLPASGNSSDGEKSAAPPSDTSSSVDAVTASLVEAAGNVTPPGSEGEEIGATAVDLAKGISFETPKPKDGEVEEDGDGSEAKKLRVILYTVLSLVPFLLLIPFLGGRDLVPLDPNQM 144
            A P   R  S L ASG +  GE+  A PS+ S +  +  A+  E  G            G + VDL+KGI+FE PKPK  E E+  + S++KK+RVI+YTVLSLVPF+LL+PFLGGR+L+PLDP+QM
Sbjct:   76 AVPSLDRWQSRLGASGETL-GEEGIANPSEESEATSSGGATNSEPGG------------GGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19011.5240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ2_ECTSI4.960e-2248.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 133..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..112
NoneNo IPR availableTMHMMTMhelixcoord: 113..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19011contigH-elongata_contig19011:1886..3181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19011.5240.1mRNA_H-elongata_contig19011.5240.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19011 1736..4398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19011.5240.1 ID=prot_H-elongata_contig19011.5240.1|Name=mRNA_H-elongata_contig19011.5240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MDMTNLAGGVVLKKNRLAFPCSARRHSHLPASGNSSDGEKSAAPPSDTSS
SVDAVTASLVEAAGNVTPPGSEGEEIGATAVDLAKGISFETPKPKDGEVE
EDGDGSEAKKLRVILYTVLSLVPFLLLIPFLGGRDLVPLDPNQM*
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