mRNA_H-elongata_contig190065.5238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190065.5238.1
Unique NamemRNA_H-elongata_contig190065.5238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: D7G3W6_ECTSI (Protein disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.140e-33
Identity = 58/99 (58.59%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   25 AWESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINE 321
            ++  +V   D+DVLV FYAPWCPHC+RL P+Y+++AE+L GR KLV+A MDV++ND+  P V AKKLPT++LFKA SK+ PE + GEH++  LEAF+NE
Sbjct:  686 SFRRIVIDNDNDVLVAFYAPWCPHCRRLGPIYEDMAERLAGREKLVVANMDVAANDLDYPGVSAKKLPTVVLFKAGSKDKPEVYDGEHELEPLEAFVNE 784          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A6I9XZX0_9SAUR (Protein disulfide-isomerase A4 n=21 Tax=Serpentes TaxID=8570 RepID=A0A6I9XZX0_9SAUR)

HSP 1 Score: 100 bits (249), Expect = 1.960e-22
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKF-TGEHDVASLEAFINEKA 327
            +ES+V   + DVL++FYAPWC HCK+L P+Y EL +K   ++ ++IAKMD ++ND+ N   K +  PTI    + SK++P KF TGE D+ SL  F+ E A
Sbjct:  527 FESIVMDPNSDVLIEFYAPWCGHCKKLEPIYMELGKKYKNQKNVIIAKMDATANDVTNDSYKVEGFPTIYFAPSNSKKNPIKFETGERDLESLSKFVEEHA 627          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: UPI001C4D7B4B (protein disulfide-isomerase A4 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4D7B4B)

HSP 1 Score: 99.8 bits (247), Expect = 3.670e-22
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKF-TGEHDVASLEAFINEKA 327
            +ES+V     DVL++FYAPWC HCK+L P+Y EL +K   ++ LVIAKMD ++ND+PN   K +  PTI    +  K++P KF +GE D+ +L  F+ E A
Sbjct:  532 FESIVMDPKTDVLIEFYAPWCGHCKKLEPIYSELGKKYKNQKNLVIAKMDSTANDVPNDNYKVEGFPTIYFAPSSKKKNPIKFESGERDLENLSKFVEEHA 632          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A6G0X952_9STRA (Protein disulfide-isomerase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X952_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.400e-22
Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINEKA 327
            +E+ V  +D DVL++FYAPWC HCK LAP Y++LAE   G   +VIAKMD + N+I +P V  K  PTI  F A  K +P  + G  +VA   +F+ E A
Sbjct:  382 FETRVMNSDKDVLLEFYAPWCGHCKSLAPKYEQLAESFAGVDSIVIAKMDATENEIDHPKVDVKGFPTIFFFPANDKANPVAYEGAREVAGFTSFLKEHA 481          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A8D2L3R1_VARKO (Protein disulfide-isomerase A4 n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L3R1_VARKO)

HSP 1 Score: 99.0 bits (245), Expect = 6.860e-22
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKF-TGEHDVASLEAFINE 321
            +ES+V   + DVL++FYAPWC HCK+L P+Y EL +K   ++ LVIAKMD ++ND+P+   K +  PTI    +  K++P KF +GE D+ SL  F+ E
Sbjct:  535 FESIVMDPNADVLIEFYAPWCGHCKKLEPIYTELGKKYKNQKNLVIAKMDATANDVPSDKYKTEGFPTIYFAPSNKKKNPIKFESGERDLESLSKFVEE 633          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A6U1MBH6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MBH6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.540e-22
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   61 VLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINEKA 327
            +LV+FYAPWC HCK+LAP+YDEL EK  G   ++IAKMD ++N+I +  V  K  PTI+ F    K +P  + G  D+     F++EKA
Sbjct:   46 ILVEFYAPWCGHCKKLAPIYDELGEKFEGVDSVMIAKMDATANEIDHDGVNVKGFPTIIYFPGSDKSNPVTYQGARDLDGFVEFLSEKA 134          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A6F9DNY6_9ASCI (Protein disulfide-isomerase n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DNY6_9ASCI)

HSP 1 Score: 97.8 bits (242), Expect = 1.730e-21
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINEK 324
            ++ +V   D DV+++FYAPWC HCK+L P+Y +L +KL    K+ IAKMD ++NDIP+   KA+  PTI    A  K+ P K+ G  ++  LE++I EK
Sbjct:  520 FDEIVLNKDKDVMIEFYAPWCGHCKKLEPIYKKLGKKLKDNNKVTIAKMDATANDIPHSAYKAEGFPTIYWSPAGDKDHPVKYEGGRELKDLESYIAEK 618          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A836CFW1_9STRA (Protein disulfide-isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.830e-21
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   25 AWESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINEKA 327
            ++ES+V  ++  V V+FYAPWC HCK L P +DE+A+KL G + +VIAKMD ++N++ +P V  +  PT+L F A  K +P  + GE +V  L  F+ E A
Sbjct:  373 SFESIVVNSEASVFVEFYAPWCGHCKALEPKWDEVAQKLEGDKSVVIAKMDATANEVDHPGVDVQGFPTLLFFPAGDKSNPVTYEGEREVDFLLKFVKENA 473          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A7L2K3Y8_CINMU (Protein disulfide-isomerase (Fragment) n=165 Tax=Aves TaxID=8782 RepID=A0A7L2K3Y8_CINMU)

HSP 1 Score: 92.0 bits (227), Expect = 2.060e-21
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   28 WESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTG-EHDVASLEAFINEKA 327
            ++++V    +DVL++FYAPWC HCK+L PVY+EL +K    + L+IAKMD ++ND+ N   K +  PTI       K +P KF G + D+  L  FI E A
Sbjct:   48 FDTIVMDPKNDVLIEFYAPWCGHCKKLEPVYNELGKKYKNEKNLIIAKMDATANDVTNDHYKVEGFPTIYFAPKDKKNNPIKFEGGDRDLEHLSNFIEEHA 148          
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Match: A0A482RSS8_9ARCH (Thiol reductase thioredoxin n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSS8_9ARCH)

HSP 1 Score: 90.5 bits (223), Expect = 2.140e-21
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   37 LVSRADDDVLVDFYAPWCPHCKRLAPVYDELAE--KLNGRRKLVIAKMDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINEKA 327
            +V   D DVLV+FYAPWC HC++LAP++DEL    K NG+ K+V+AKMD ++N++  P +  +  PTI  FK  +K SP K++G   +    AF+ E A
Sbjct:    1 MVVNNDHDVLVEFYAPWCGHCQKLAPIWDELGRTAKQNGQ-KIVVAKMDATANEVDVPGLAVQGFPTIYYFKGDNKASPVKYSGGRTLEDFLAFLEENA 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190065.5238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3W6_ECTSI8.140e-3358.59Protein disulfide isomerase n=1 Tax=Ectocarpus sil... [more]
A0A6I9XZX0_9SAUR1.960e-2246.53Protein disulfide-isomerase A4 n=21 Tax=Serpentes ... [more]
UPI001C4D7B4B3.670e-2246.53protein disulfide-isomerase A4 n=1 Tax=Sceloporus ... [more]
A0A6G0X952_9STRA5.400e-2247.00Protein disulfide-isomerase n=1 Tax=Aphanomyces eu... [more]
A0A8D2L3R1_VARKO6.860e-2246.46Protein disulfide-isomerase A4 n=2 Tax=Varanus kom... [more]
A0A6U1MBH6_9STRA9.540e-2247.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6F9DNY6_9ASCI1.730e-2144.44Protein disulfide-isomerase n=1 Tax=Phallusia mamm... [more]
A0A836CFW1_9STRA1.830e-2144.55Protein disulfide-isomerase n=1 Tax=Tribonema minu... [more]
A0A7L2K3Y8_CINMU2.060e-2143.56Protein disulfide-isomerase (Fragment) n=165 Tax=A... [more]
A0A482RSS8_9ARCH2.140e-2145.45Thiol reductase thioredoxin n=1 Tax=archaeon TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190065contigH-elongata_contig190065:417..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5e-29
Seed eggNOG ortholog2880.D7G3W6
KEGG koko:K09580
KEGG Pathwayko04141,map04141
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-09_001660.1
Exons2
Model size327
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190065.5238.1prot_H-elongata_contig190065.5238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190065 417..1098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.9728968-CDS-H-elongata_contig190065:416..5361622930086.9728968-CDS-H-elongata_contig190065:416..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190065 417..536 -
1691679275.4400427-CDS-H-elongata_contig190065:416..5361691679275.4400427-CDS-H-elongata_contig190065:416..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190065 417..536 -
1622930086.9877594-CDS-H-elongata_contig190065:912..10981622930086.9877594-CDS-H-elongata_contig190065:912..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190065 913..1098 -
1691679275.4519038-CDS-H-elongata_contig190065:912..10981691679275.4519038-CDS-H-elongata_contig190065:912..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190065 913..1098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.9998653-UTR-H-elongata_contig190065:1098..11191622930086.9998653-UTR-H-elongata_contig190065:1098..1119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190065 1099..1119 -
1691679275.4620953-UTR-H-elongata_contig190065:1098..11191691679275.4620953-UTR-H-elongata_contig190065:1098..1119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190065 1099..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190065.5238.1

>prot_H-elongata_contig190065.5238.1 ID=prot_H-elongata_contig190065.5238.1|Name=mRNA_H-elongata_contig190065.5238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MAWESLVSRADDDVLVDFYAPWCPHCKRLAPVYDELAEKLNGRRKLVIAK
MDVSSNDIPNPMVKAKKLPTILLFKAQSKESPEKFTGEHDVASLEAFINE
KA
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mRNA from alignment at H-elongata_contig190065:417..1119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190065.5238.1 ID=mRNA_H-elongata_contig190065.5238.1|Name=mRNA_H-elongata_contig190065.5238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=703bp|location=Sequence derived from alignment at H-elongata_contig190065:417..1119- (Himanthalia elongata Himel1 dioecious)
CCCCTCCCTCCAACCCTGCTGATGGCGTGGGAATCACTTGTGTCCCGCGC AGACGATGACGTGCTGGTTGATTTCTACGCTCCATGGTGTCCTCACTGCA AGCGGTTAGCGCCCGTCTACGACGAGCTCGCGGAGAAACTGAACGGGCGC AGAAAGCTCGTCATCGCCAAGATGGACGTCAGCTCGAACGACATCCCTAA CCCGATGGTAAATGAGGATATGGCGTTTCTGTTTTGATTATAGTACTGTG TAAATCTTAGTGCACCGAAACGCGCAGATGACGGCATTTTCGCTCTGCCG TATCCTGTTCTCGATGCGGTGTCCTAGATGATCAGGGACAGGTTTTGGCG AGCCTGGGGCGCCCACGTCTTATTTTTTCCAGTGGGAACACGTTCGTTTT TTTTTGTCGTGTGCTATGCGTTGATTGTTCCAGTTGCGGCGCGAAGGAAA TCGGGTCGTGCCGAAGACGCTATATAGAAATATGCTGCAATTAGTGTACA TAACAAGTCCATATTCAGGAATGAGTTTTGTACTGAGAGATAAATATTTG CAAAACATATGATACTCGAAAACACACACATAGGTGAAAGCGAAGAAGTT GCCCACGATTCTTCTCTTCAAGGCGCAATCCAAGGAATCTCCAGAGAAGT TCACCGGCGAGCATGATGTCGCTTCTTTAGAAGCTTTCATAAATGAAAAG GCG
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Coding sequence (CDS) from alignment at H-elongata_contig190065:417..1119-

>mRNA_H-elongata_contig190065.5238.1 ID=mRNA_H-elongata_contig190065.5238.1|Name=mRNA_H-elongata_contig190065.5238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig190065:417..1119- (Himanthalia elongata Himel1 dioecious)
ATGGCGTGGGAATCACTTGTGTCCCGCGCAGACGATGACGTGCTGGTTGA
TTTCTACGCTCCATGGTGTCCTCACTGCAAGCGGTTAGCGCCCGTCTACG
ACGAGCTCGCGGAGAAACTGAACGGGCGCAGAAAGCTCGTCATCGCCAAG
ATGGACGTCAGCTCGAACGACATCCCTAACCCGATGATGGCGTGGGAATC
ACTTGTGTCCCGCGCAGACGATGACGTGCTGGTTGATTTCTACGCTCCAT
GGTGTCCTCACTGCAAGCGGTTAGCGCCCGTCTACGACGAGCTCGCGGAG
AAACTGAACGGGCGCAGAAAGCTCGTCATCGCCAAGATGGACGTCAGCTC
GAACGACATCCCTAACCCGATGGTGAAAGCGAAGAAGTTGCCCACGATTC
TTCTCTTCAAGGCGCAATCCAAGGAATCTCCAGAGAAGTTCACCGGCGAG
CATGATGTCGCTTCTTTAGAAGCTTTCATAAATGAAAAGGCGGTGAAAGC
GAAGAAGTTGCCCACGATTCTTCTCTTCAAGGCGCAATCCAAGGAATCTC
CAGAGAAGTTCACCGGCGAGCATGATGTCGCTTCTTTAGAAGCTTTCATA
AATGAAAAGGCG
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