mRNA_H-elongata_contig106388.521.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: D8LJ65_ECTSI (tRNA-i(6)A37 thiotransferase enzyme MiaB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ65_ECTSI) HSP 1 Score: 165 bits (418), Expect = 2.680e-47 Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
QVPEDVKADRLQRVMRLGC HAQERS+RYMGR+EEVLVEERNPKNA QVMGRTRTNRPVFL+GDI +L+GKL+K ITECRPWSLTGV GE Y
Sbjct: 362 QVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEERNPKNAAQVMGRTRTNRPVFLNGDIGQLKGKLIKAEITECRPWSLTGVAQGEPY 455
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A6H5KNX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX7_9PHAE) HSP 1 Score: 166 bits (421), Expect = 3.210e-46 Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
QVPEDVKADRLQRVMRLGC HAQERS+RYMGR+EEVLVEERNPKNA QVMGRTRTNRPVFL+GDI EL+GKL+K ITECRPWSLTGV GE Y
Sbjct: 637 QVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEERNPKNAAQVMGRTRTNRPVFLNGDIGELKGKLIKAEITECRPWSLTGVAQGEPY 730
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S4DL29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL29_HETAK) HSP 1 Score: 136 bits (342), Expect = 1.040e-35 Identity = 70/94 (74.47%), Postives = 74/94 (78.72%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
QVPEDVKADRLQR+ RL HA ERSERY+GR+EEVLVEERN KN QV GRTRTNRPVF DGDI EL+GK V RITE RPWSLTG G Y
Sbjct: 451 QVPEDVKADRLQRLQRLATQHAMERSERYLGRIEEVLVEERNVKNIQQVKGRTRTNRPVFFDGDITELQGKHVSVRITETRPWSLTGELAGTPY 544
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A835YXD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD9_9STRA) HSP 1 Score: 130 bits (328), Expect = 6.840e-34 Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGE 276
QVPE+VK++RLQ++ RLG HAQERSERY+GR+ EVLVEERNPKN QV GR R NRPVF GDI ELRGKL+ +ITE RPWSLTG R G+
Sbjct: 411 QVPEEVKSERLQKLQRLGAQHAQERSERYLGRVVEVLVEERNPKNPSQVTGRNRQNRPVFFAGDIDELRGKLIDVKITEVRPWSLTGQRAGD 502
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S2V0W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W1_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.020e-30 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
QVP+D+KADRLQR+ RL A+++S RY+GR EVLVEERNPK QV GRTRTNRPVF +GDI L+GKLV IT+C WS++G + GEAY
Sbjct: 261 QVPDDIKADRLQRLQRLAVVQAEQKSRRYIGRTMEVLVEERNPKKPNQVTGRTRTNRPVFFNGDISLLKGKLVPVHITDCGAWSISGEQAGEAY 354
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S0B099_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B099_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.430e-30 Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
QVP+DVKA+RLQ+V RL HA ERSERY+GR EV+VEERNP+N QVMGRTR +R VF DGDI EL G LV ++ E RPWSLTG
Sbjct: 177 QVPDDVKAERLQKVQRLATEHALERSERYVGRTVEVMVEERNPRNVEQVMGRTRQSRQVFFDGDIDELMGSLVDVKVIEARPWSLTG 263
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A0G4ERE5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERE5_VITBC) HSP 1 Score: 117 bits (292), Expect = 1.710e-28 Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG-VRHGE 276
Q+P+DVK DRL+R+ L HA ER+ RY+GR+EEVLVEERN KN QVMGRTR NR VF DGDI ELRG++V R+TE RP+SLTG + GE
Sbjct: 539 QLPDDVKEDRLRRINELAAQHAYERNLRYLGRVEEVLVEERNVKNPTQVMGRTRGNRLVFFDGDIAELRGRMVPVRVTEVRPYSLTGRIERGE 631
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S2ACC5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ACC5_TRICV) HSP 1 Score: 112 bits (281), Expect = 3.170e-28 Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
Q+P+DVKA RLQ V RL AHA ERSERY+GR+EEVLVE+RNP++ QVMGRTR R VF DGD+ EL G V+ I E RPWSL G
Sbjct: 224 QIPDDVKAQRLQIVQRLATAHALERSERYVGRVEEVLVEDRNPRDLGQVMGRTRQGRQVFFDGDVDELMGHTVEVEIVEARPWSLVG 310
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: UPI00036EB697 (MiaB/RimO family radical SAM methylthiotransferase n=1 Tax=Fischerella muscicola TaxID=92938 RepID=UPI00036EB697) HSP 1 Score: 109 bits (273), Expect = 9.370e-28 Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
Q+ E+VK+DRLQR+ L A ERS+RYMGRLEEVLVE++NPK+ QVMGRTRTNR F GDI EL+GKLVK +ITE R +SLTG
Sbjct: 137 QLSEEVKSDRLQRLNHLVAIKAAERSQRYMGRLEEVLVEDQNPKDKTQVMGRTRTNRLTFFTGDINELKGKLVKVKITEVRAFSLTG 223
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A6P0U6U2_9CYAN (TRAM domain-containing protein (Fragment) n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0U6U2_9CYAN) HSP 1 Score: 107 bits (267), Expect = 1.480e-27 Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
Q+ E+VKADRLQR+ L A ERS+RYMGR EE+LVE+ N KNA QVMGRTR NR F +GDI +L+GKLVK +ITE RP+SLTG
Sbjct: 75 QLSEEVKADRLQRLNHLVGVKAAERSQRYMGRTEEILVEDTNHKNAAQVMGRTRGNRLTFFEGDINKLKGKLVKVKITEVRPFSLTG 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106388.521.1 >prot_H-elongata_contig106388.521.1 ID=prot_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMback to top mRNA from alignment at H-elongata_contig106388:366..997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106388.521.1 ID=mRNA_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=632bp|location=Sequence derived from alignment at H-elongata_contig106388:366..997+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106388:366..997+ >mRNA_H-elongata_contig106388.521.1 ID=mRNA_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig106388:366..997+ (Himanthalia elongata Himel1 dioecious)back to top |