mRNA_H-elongata_contig106388.521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106388.521.1
Unique NamemRNA_H-elongata_contig106388.521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: D8LJ65_ECTSI (tRNA-i(6)A37 thiotransferase enzyme MiaB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ65_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.680e-47
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
            QVPEDVKADRLQRVMRLGC HAQERS+RYMGR+EEVLVEERNPKNA QVMGRTRTNRPVFL+GDI +L+GKL+K  ITECRPWSLTGV  GE Y
Sbjct:  362 QVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEERNPKNAAQVMGRTRTNRPVFLNGDIGQLKGKLIKAEITECRPWSLTGVAQGEPY 455          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A6H5KNX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 3.210e-46
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
            QVPEDVKADRLQRVMRLGC HAQERS+RYMGR+EEVLVEERNPKNA QVMGRTRTNRPVFL+GDI EL+GKL+K  ITECRPWSLTGV  GE Y
Sbjct:  637 QVPEDVKADRLQRVMRLGCTHAQERSDRYMGRVEEVLVEERNPKNAAQVMGRTRTNRPVFLNGDIGELKGKLIKAEITECRPWSLTGVAQGEPY 730          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S4DL29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL29_HETAK)

HSP 1 Score: 136 bits (342), Expect = 1.040e-35
Identity = 70/94 (74.47%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
            QVPEDVKADRLQR+ RL   HA ERSERY+GR+EEVLVEERN KN  QV GRTRTNRPVF DGDI EL+GK V  RITE RPWSLTG   G  Y
Sbjct:  451 QVPEDVKADRLQRLQRLATQHAMERSERYLGRIEEVLVEERNVKNIQQVKGRTRTNRPVFFDGDITELQGKHVSVRITETRPWSLTGELAGTPY 544          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A835YXD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD9_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.840e-34
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGE 276
            QVPE+VK++RLQ++ RLG  HAQERSERY+GR+ EVLVEERNPKN  QV GR R NRPVF  GDI ELRGKL+  +ITE RPWSLTG R G+
Sbjct:  411 QVPEEVKSERLQKLQRLGAQHAQERSERYLGRVVEVLVEERNPKNPSQVTGRNRQNRPVFFAGDIDELRGKLIDVKITEVRPWSLTGQRAGD 502          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S2V0W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.020e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY 282
            QVP+D+KADRLQR+ RL    A+++S RY+GR  EVLVEERNPK   QV GRTRTNRPVF +GDI  L+GKLV   IT+C  WS++G + GEAY
Sbjct:  261 QVPDDIKADRLQRLQRLAVVQAEQKSRRYIGRTMEVLVEERNPKKPNQVTGRTRTNRPVFFNGDISLLKGKLVPVHITDCGAWSISGEQAGEAY 354          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S0B099_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B099_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.430e-30
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
            QVP+DVKA+RLQ+V RL   HA ERSERY+GR  EV+VEERNP+N  QVMGRTR +R VF DGDI EL G LV  ++ E RPWSLTG
Sbjct:  177 QVPDDVKAERLQKVQRLATEHALERSERYVGRTVEVMVEERNPRNVEQVMGRTRQSRQVFFDGDIDELMGSLVDVKVIEARPWSLTG 263          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A0G4ERE5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERE5_VITBC)

HSP 1 Score: 117 bits (292), Expect = 1.710e-28
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG-VRHGE 276
            Q+P+DVK DRL+R+  L   HA ER+ RY+GR+EEVLVEERN KN  QVMGRTR NR VF DGDI ELRG++V  R+TE RP+SLTG +  GE
Sbjct:  539 QLPDDVKEDRLRRINELAAQHAYERNLRYLGRVEEVLVEERNVKNPTQVMGRTRGNRLVFFDGDIAELRGRMVPVRVTEVRPYSLTGRIERGE 631          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A7S2ACC5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ACC5_TRICV)

HSP 1 Score: 112 bits (281), Expect = 3.170e-28
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
            Q+P+DVKA RLQ V RL  AHA ERSERY+GR+EEVLVE+RNP++  QVMGRTR  R VF DGD+ EL G  V+  I E RPWSL G
Sbjct:  224 QIPDDVKAQRLQIVQRLATAHALERSERYVGRVEEVLVEDRNPRDLGQVMGRTRQGRQVFFDGDVDELMGHTVEVEIVEARPWSLVG 310          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: UPI00036EB697 (MiaB/RimO family radical SAM methylthiotransferase n=1 Tax=Fischerella muscicola TaxID=92938 RepID=UPI00036EB697)

HSP 1 Score: 109 bits (273), Expect = 9.370e-28
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
            Q+ E+VK+DRLQR+  L    A ERS+RYMGRLEEVLVE++NPK+  QVMGRTRTNR  F  GDI EL+GKLVK +ITE R +SLTG
Sbjct:  137 QLSEEVKSDRLQRLNHLVAIKAAERSQRYMGRLEEVLVEDQNPKDKTQVMGRTRTNRLTFFTGDINELKGKLVKVKITEVRAFSLTG 223          
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Match: A0A6P0U6U2_9CYAN (TRAM domain-containing protein (Fragment) n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0U6U2_9CYAN)

HSP 1 Score: 107 bits (267), Expect = 1.480e-27
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVMGRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTG 261
            Q+ E+VKADRLQR+  L    A ERS+RYMGR EE+LVE+ N KNA QVMGRTR NR  F +GDI +L+GKLVK +ITE RP+SLTG
Sbjct:   75 QLSEEVKADRLQRLNHLVGVKAAERSQRYMGRTEEILVEDTNHKNAAQVMGRTRGNRLTFFEGDINKLKGKLVKVKITEVRPFSLTG 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106388.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ65_ECTSI2.680e-4785.11tRNA-i(6)A37 thiotransferase enzyme MiaB n=1 Tax=E... [more]
A0A6H5KNX7_9PHAE3.210e-4686.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DL29_HETAK1.040e-3574.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YXD9_9STRA6.840e-3470.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V0W1_9STRA1.020e-3062.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0B099_9STRA1.430e-3067.82Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A0G4ERE5_VITBC1.710e-2864.52Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2ACC5_TRICV3.170e-2865.52Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI00036EB6979.370e-2866.67MiaB/RimO family radical SAM methylthiotransferase... [more]
A0A6P0U6U2_9CYAN1.480e-2765.52TRAM domain-containing protein (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106388contigH-elongata_contig106388:366..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.5e-39
Seed eggNOG ortholog2880.D8LJ65
EggNOG free text desc.N6-isopentenyladenosine methylthiotransferase activity
EggNOG OGsCOG0621@1,KOG2492@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.7455413-CDS-H-elongata_contig106388:365..5091622929594.7455413-CDS-H-elongata_contig106388:365..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106388 366..509 +
1691679083.7550907-CDS-H-elongata_contig106388:365..5091691679083.7550907-CDS-H-elongata_contig106388:365..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106388 366..509 +
1622929594.7631764-CDS-H-elongata_contig106388:856..9971622929594.7631764-CDS-H-elongata_contig106388:856..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106388 857..997 +
1691679083.76972-CDS-H-elongata_contig106388:856..9971691679083.76972-CDS-H-elongata_contig106388:856..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106388 857..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106388.521.1prot_H-elongata_contig106388.521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106388 366..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106388.521.1

>prot_H-elongata_contig106388.521.1 ID=prot_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
QVPEDVKADRLQRVMRLGCAHAQERSERYMGRLEEVLVEERNPKNAVQVM
GRTRTNRPVFLDGDIVELRGKLVKTRITECRPWSLTGVRHGEAY*
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mRNA from alignment at H-elongata_contig106388:366..997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106388.521.1 ID=mRNA_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=632bp|location=Sequence derived from alignment at H-elongata_contig106388:366..997+ (Himanthalia elongata Himel1 dioecious)
CAGGTTCCAGAAGACGTGAAGGCGGACCGACTACAAAGGGTAATGCGCCT GGGCTGCGCGCACGCCCAGGAGAGAAGTGAGCGCTACATGGGAAGGCTAG AGGAGGTGCTCGTTGAAGAGCGCAACCCGAAAAACGCCGTCCAGGTTAGC TCCGAAAGTACGCATGCTTATCCCCGCACACGCACGTTGGGCATCACATC CTTGTTGACGAAATTAATTCTCGCCGTTGGACGCTCTAAAGTGCAGCCGC GCAGCGTTTTCTACCAGTTTGTCCCCCTCCCCTGAAACCGGGGACCCAAC AATGCTCCGTTCTTCTGAGGACGTGTGGTCAACCGTCCAGCTGCTATGCA TGCAAAACTTAATCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCATTTTA TTTTTTTAAACAAAAAAACATCTTTAACTCCCAGGAGTTCGCTATACTGT AATAACCATACCAGCGCCCCGTGTAAACGATTATCCTCCAGGTAATGGGG CGAACCCGCACCAACCGGCCCGTGTTTCTCGATGGTGACATCGTCGAGCT GAGGGGAAAGCTTGTGAAGACACGCATCACGGAATGCCGACCCTGGAGCT TGACGGGAGTTCGACATGGGGAGGCGTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106388:366..997+

>mRNA_H-elongata_contig106388.521.1 ID=mRNA_H-elongata_contig106388.521.1|Name=mRNA_H-elongata_contig106388.521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig106388:366..997+ (Himanthalia elongata Himel1 dioecious)
CAGGTTCCAGAAGACGTGAAGGCGGACCGACTACAAAGGGTAATGCGCCT
GGGCTGCGCGCACGCCCAGGAGAGAAGTGAGCGCTACATGGGAAGGCTAG
AGGAGGTGCTCGTTGAAGAGCGCAACCCGAAAAACGCCGTCCAGCAGGTT
CCAGAAGACGTGAAGGCGGACCGACTACAAAGGGTAATGCGCCTGGGCTG
CGCGCACGCCCAGGAGAGAAGTGAGCGCTACATGGGAAGGCTAGAGGAGG
TGCTCGTTGAAGAGCGCAACCCGAAAAACGCCGTCCAGGTAATGGGGCGA
ACCCGCACCAACCGGCCCGTGTTTCTCGATGGTGACATCGTCGAGCTGAG
GGGAAAGCTTGTGAAGACACGCATCACGGAATGCCGACCCTGGAGCTTGA
CGGGAGTTCGACATGGGGAGGCGTACTGAGTAATGGGGCGAACCCGCACC
AACCGGCCCGTGTTTCTCGATGGTGACATCGTCGAGCTGAGGGGAAAGCT
TGTGAAGACACGCATCACGGAATGCCGACCCTGGAGCTTGACGGGAGTTC
GACATGGGGAGGCGTACTGA
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