mRNA_H-elongata_contig18897.5188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18897.5188.1
Unique NamemRNA_H-elongata_contig18897.5188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18897.5188.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 4.630e-22
Identity = 238/385 (61.82%), Postives = 271/385 (70.39%), Query Frame = 1 
Query:  466 NAKVPRFQPFGRAGGEGGRVAEDVFEQFGVGGAPRFSRAAVATPEEERSVLKWLELAVKMRPRAVAEMLEREPRVVQQSLEAMGRRLTWLKDRLRLSEEQVRSLVHRRPSLLCR---DGMESKXXXXXXXXXXXXXXXXXXXXXXXXXLSAGIEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVEGALEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMMEAEAMVAVRKDARLLLRSPLVLQTKVDFFRNEMSASREDMKEILLNSPNVLLVSVDLVLEPRVAAMREAGIEPSFALHWNVVVFGPAGEEGFDGWLSRQARR 1611
            NA  PRFQPFGRAGGEG +VAE ++E FG+    ++S  A    +E + VL WLE  V+M  RA+A+M+E+EPR+ +Q   A+  RL                     PS+LCR   D ME K XXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 LLLRS  VL  KV FF  EM A+ ED++ +L+ SPN LL+S+DL+L PRVA +++AG++ SF+ HWN + FGP GE  FD W+ RQA R
Sbjct:   72 NADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEAT---DERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEA-FDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18897.5188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI4.630e-2261.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18897contigH-elongata_contig18897:735..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue3.4e-22
Seed eggNOG ortholog2880.D7FVG4
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
Exons2
Model size2357
Cds size1467
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18897.5188.1prot_H-elongata_contig18897.5188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18897 933..2399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.7299755-UTR-H-elongata_contig18897:734..9321622930080.7299755-UTR-H-elongata_contig18897:734..932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 735..932 +
1691679273.3187993-UTR-H-elongata_contig18897:734..9321691679273.3187993-UTR-H-elongata_contig18897:734..932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 735..932 +
1622930080.761988-UTR-H-elongata_contig18897:2399..26901622930080.761988-UTR-H-elongata_contig18897:2399..2690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 2400..2690 +
1691679273.3407662-UTR-H-elongata_contig18897:2399..26901691679273.3407662-UTR-H-elongata_contig18897:2399..2690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 2400..2690 +
1622930080.7756138-UTR-H-elongata_contig18897:2748..31491622930080.7756138-UTR-H-elongata_contig18897:2748..3149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 2749..3149 +
1691679273.3557854-UTR-H-elongata_contig18897:2748..31491691679273.3557854-UTR-H-elongata_contig18897:2748..3149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18897 2749..3149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.7454202-CDS-H-elongata_contig18897:932..23991622930080.7454202-CDS-H-elongata_contig18897:932..2399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18897 933..2399 +
1691679273.3298423-CDS-H-elongata_contig18897:932..23991691679273.3298423-CDS-H-elongata_contig18897:932..2399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18897 933..2399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18897.5188.1

>prot_H-elongata_contig18897.5188.1 ID=prot_H-elongata_contig18897.5188.1|Name=mRNA_H-elongata_contig18897.5188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=489bp
MFPVASARRTVVASAVYLVRGGGLRDYQCASFACRRASSSAVTDRFSLES
PSPRMRARPGDGKASRRGRRRRETAREEASSALERQPQENAKVPRFQPFG
RAGGEGGRVAEDVFEQFGVGGAPRFSRAAVATPEEERSVLKWLELAVKMR
PRAVAEMLEREPRVVQQSLEAMGRRLTWLKDRLRLSEEQVRSLVHRRPSL
LCRDGMESKVRWLQEALGVDDDQVASMVTSAPNLLSAGIEGGGLETKLEW
LAKRLRLSRKELVLVVTSCPQLMTSSVEGALEPRLVWLQDTLQIGAGTLR
ERVLSHPWLLSLSKEGKLVPTLEFLTNDLLLDEVSVRKTLFRQPRMFLTP
LRPALASTTEWLCRSLGMMEAEAMVAVRKDARLLLRSPLVLQTKVDFFRN
EMSASREDMKEILLNSPNVLLVSVDLVLEPRVAAMREAGIEPSFALHWNV
VVFGPAGEEGFDGWLSRQARRRYRGRGWSDSIGSSRTP*
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mRNA from alignment at H-elongata_contig18897:735..3149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18897.5188.1 ID=mRNA_H-elongata_contig18897.5188.1|Name=mRNA_H-elongata_contig18897.5188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2415bp|location=Sequence derived from alignment at H-elongata_contig18897:735..3149+ (Himanthalia elongata Himel1 dioecious)
GACAGGGGATAGAGCGCGCCGACTCGTCGCCTCTTCGAGGCGGCCGTTAG
ACCATCGCTTGAGCCGAATCCGGCACGCACCGTGAGGGGGGAATTCTGTA
GTGGAAGATTATCTTATCGTCAGAATAGGTGCGCGCCCTCGTGTTTTATC
GAGGGGTGGAAGGGGGGGGGAGGGAGAGTAGAGAGAAAATAGTATATTAT
GTTTCCCGTCGCAAGCGCACGCCGGACAGTGGTAGCCTCAGCTGTGTACC
TGGTTCGTGGAGGAGGTCTTCGTGACTACCAGTGCGCTTCGTTCGCCTGC
CGCCGGGCGAGCAGCAGCGCTGTCACAGATCGTTTCTCGTTGGAATCACC
CAGCCCCAGGATGCGCGCCCGACCCGGTGACGGCAAGGCCTCGCGGAGAG
GTCGGCGGCGACGCGAGACTGCGAGAGAAGAGGCGTCAAGTGCCCTCGAG
AGGCAACCACAGGAGAACGCCAAGGTCCCTCGCTTCCAGCCGTTCGGGCG
GGCGGGAGGAGAGGGCGGCAGAGTGGCGGAGGACGTATTTGAGCAGTTCG
GAGTGGGCGGCGCGCCAAGGTTCTCTAGGGCGGCGGTGGCGACGCCGGAG
GAAGAGCGGAGCGTGCTGAAGTGGCTCGAGCTGGCGGTCAAGATGCGACC
ACGCGCAGTGGCGGAGATGCTGGAACGAGAGCCGCGCGTGGTTCAGCAGA
GCCTCGAAGCGATGGGTCGTCGGCTGACTTGGCTCAAGGATCGACTCCGG
CTTAGCGAAGAGCAGGTGCGCAGTCTGGTGCACCGAAGGCCGTCTCTCCT
CTGCCGGGACGGCATGGAATCCAAGGTGCGGTGGCTGCAAGAAGCACTTG
GTGTGGACGATGATCAGGTGGCGTCGATGGTGACGTCGGCGCCGAACCTA
CTTAGCGCTGGCATCGAAGGGGGCGGCCTGGAGACTAAGCTCGAGTGGCT
CGCGAAGCGACTGCGACTCTCGCGCAAAGAGCTGGTGTTGGTGGTCACCT
CCTGCCCACAATTGATGACCAGTAGCGTCGAGGGCGCGCTCGAGCCGCGC
CTCGTTTGGCTGCAGGACACGCTGCAGATCGGCGCTGGTACGCTACGCGA
GCGAGTTCTGTCGCACCCGTGGCTGCTGAGCCTCAGCAAAGAAGGAAAGC
TTGTGCCCACGCTTGAGTTCCTGACGAACGACCTACTCCTGGACGAGGTG
AGCGTGAGAAAGACGCTCTTCAGGCAGCCGCGGATGTTTCTCACACCGCT
CAGGCCGGCCCTCGCCTCCACCACCGAGTGGCTCTGTCGGAGCTTGGGGA
TGATGGAAGCTGAGGCGATGGTTGCGGTGAGGAAGGACGCACGGCTCCTG
CTGCGGAGCCCCCTGGTGCTGCAGACCAAGGTGGACTTCTTCAGGAACGA
GATGAGCGCGTCTCGCGAGGACATGAAGGAAATCTTGCTGAACAGCCCCA
ACGTCTTGCTCGTGAGCGTCGATCTGGTTCTGGAGCCTCGGGTCGCGGCG
ATGCGCGAGGCGGGGATTGAGCCCTCTTTCGCTCTGCACTGGAACGTGGT
AGTGTTCGGGCCGGCAGGGGAGGAGGGCTTCGATGGTTGGCTTTCAAGGC
AGGCGAGGAGGCGCTACAGGGGCAGGGGGTGGAGTGATTCAATTGGTTCC
AGTCGAACCCCATAACAAGAATTTAAGGCATCAAGCGTGCCTGTGGATGT
TTGTTTTATGTGGTGGAAGCTGTGTGTTTTTTCCACCTCCTCCCCTGCGC
CCCCGTCCCCGTCCATTTTATGATGGGGTGGGGTCGTTTTATGGAGCCGA
GGGCGACATCGAATTGCGTATAGAGGGCCGAAGTGGACGTCGTTCATCAT
CTACGTGTGCGGAGTAGATCGTCTTCGTGGATCATGTCATCTCCAAAAAT
GGAAGTACTGAGTACGAAGAAGGTTTTTGTTTTTTTTATTCGGAAAATAC
ATATTTGCGGAAAGGATTAAAAAAGTACACATACATTTACGACCATGGTA
TACAGGCTATGAAGATATTTTGCTTCGTTCACTTTTTTTTTTTTTGATAG
CCTGTCAAATCTAAAATTTTGGCATTCTTTAGTCTCCTGCTTCCCGTCTA
CTAGAGATCTGCCATATTCTCGCCCTCGAAAACGAGCTGCTTGCTGCACT
GCACACGATCCCCGCAATCGAACCGTCGTGCAAGGCCGGACAGAAGGCGG
CTTGGGAGAAAGCTTTGTCCTCTCGTCAGCTCTGGGACGCTTGCATGTAT
GTATAGTCGCACATTTAGCAGAATGATTAACCTGATTTGGTTTCTTTCTG
CTCGTGGTCAGCTGAACAAAACTCCTCCATAAGGTGGGAGTATTCGAAAA
CCGGCGTGGCGCCTCCTTACGTATCATGCCGGTTTGCGCGGTTTAATGCA
AATTGATAAAAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig18897:735..3149+

>mRNA_H-elongata_contig18897.5188.1 ID=mRNA_H-elongata_contig18897.5188.1|Name=mRNA_H-elongata_contig18897.5188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2934bp|location=Sequence derived from alignment at H-elongata_contig18897:735..3149+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCCCGTCGCAAGCGCACGCCGGACAGTGGTAGCCTCAGCTGTGTA
CCTGGTTCGTGGAGGAGGTCTTCGTGACTACCAGTGCGCTTCGTTCGCCT
GCCGCCGGGCGAGCAGCAGCGCTGTCACAGATCGTTTCTCGTTGGAATCA
CCCAGCCCCAGGATGCGCGCCCGACCCGGTGACGGCAAGGCCTCGCGGAG
AGGTCGGCGGCGACGCGAGACTGCGAGAGAAGAGGCGTCAAGTGCCCTCG
AGAGGCAACCACAGGAGAACGCCAAGGTCCCTCGCTTCCAGCCGTTCGGG
CGGGCGGGAGGAGAGGGCGGCAGAGTGGCGGAGGACGTATTTGAGCAGTT
CGGAGTGGGCGGCGCGCCAAGGTTCTCTAGGGCGGCGGTGGCGACGCCGG
AGGAAGAGCGGAGCGTGCTGAAGTGGCTCGAGCTGGCGGTCAAGATGCGA
CCACGCGCAGTGGCGGAGATGCTGGAACGAGAGCCGCGCGTGGTTCAGCA
GAGCCTCGAAGCGATGGGTCGTCGGCTGACTTGGCTCAAGGATCGACTCC
GGCTTAGCGAAGAGCAGGTGCGCAGTCTGGTGCACCGAAGGCCGTCTCTC
CTCTGCCGGGACGGCATGGAATCCAAGGTGCGGTGGCTGCAAGAAGCACT
TGGTGTGGACGATGATCAGGTGGCGTCGATGGTGACGTCGGCGCCGAACC
TACTTAGCGCTGGCATCGAAGGGGGCGGCCTGGAGACTAAGCTCGAGTGG
CTCGCGAAGCGACTGCGACTCTCGCGCAAAGAGCTGGTGTTGGTGGTCAC
CTCCTGCCCACAATTGATGACCAGTAGCGTCGAGGGCGCGCTCGAGCCGC
GCCTCGTTTGGCTGCAGGACACGCTGCAGATCGGCGCTGGTACGCTACGC
GAGCGAGTTCTGTCGCACCCGTGGCTGCTGAGCCTCAGCAAAGAAGGAAA
GCTTGTGCCCACGCTTGAGTTCCTGACGAACGACCTACTCCTGGACGAGG
TGAGCGTGAGAAAGACGCTCTTCAGGCAGCCGCGGATGTTTCTCACACCG
CTCAGGCCGGCCCTCGCCTCCACCACCGAGTGGCTCTGTCGGAGCTTGGG
GATGATGGAAGCTGAGGCGATGGTTGCGGTGAGGAAGGACGCACGGCTCC
TGCTGCGGAGCCCCCTGGTGCTGCAGACCAAGGTGGACTTCTTCAGGAAC
GAGATGAGCGCGTCTCGCGAGGACATGAAGGAAATCTTGCTGAACAGCCC
CAACGTCTTGCTCGTGAGCGTCGATCTGGTTCTGGAGCCTCGGGTCGCGG
CGATGCGCGAGGCGGGGATTGAGCCCTCTTTCGCTCTGCACTGGAACGTG
GTAGTGTTCGGGCCGGCAGGGGAGGAGGGCTTCGATGGTTGGCTTTCAAG
GCAGGCGAGGAGGCGCTACAGGGGCAGGGGGTGGAGTGATTCAATTGGTT
CCAGTCGAACCCCATAAATGTTTCCCGTCGCAAGCGCACGCCGGACAGTG
GTAGCCTCAGCTGTGTACCTGGTTCGTGGAGGAGGTCTTCGTGACTACCA
GTGCGCTTCGTTCGCCTGCCGCCGGGCGAGCAGCAGCGCTGTCACAGATC
GTTTCTCGTTGGAATCACCCAGCCCCAGGATGCGCGCCCGACCCGGTGAC
GGCAAGGCCTCGCGGAGAGGTCGGCGGCGACGCGAGACTGCGAGAGAAGA
GGCGTCAAGTGCCCTCGAGAGGCAACCACAGGAGAACGCCAAGGTCCCTC
GCTTCCAGCCGTTCGGGCGGGCGGGAGGAGAGGGCGGCAGAGTGGCGGAG
GACGTATTTGAGCAGTTCGGAGTGGGCGGCGCGCCAAGGTTCTCTAGGGC
GGCGGTGGCGACGCCGGAGGAAGAGCGGAGCGTGCTGAAGTGGCTCGAGC
TGGCGGTCAAGATGCGACCACGCGCAGTGGCGGAGATGCTGGAACGAGAG
CCGCGCGTGGTTCAGCAGAGCCTCGAAGCGATGGGTCGTCGGCTGACTTG
GCTCAAGGATCGACTCCGGCTTAGCGAAGAGCAGGTGCGCAGTCTGGTGC
ACCGAAGGCCGTCTCTCCTCTGCCGGGACGGCATGGAATCCAAGGTGCGG
TGGCTGCAAGAAGCACTTGGTGTGGACGATGATCAGGTGGCGTCGATGGT
GACGTCGGCGCCGAACCTACTTAGCGCTGGCATCGAAGGGGGCGGCCTGG
AGACTAAGCTCGAGTGGCTCGCGAAGCGACTGCGACTCTCGCGCAAAGAG
CTGGTGTTGGTGGTCACCTCCTGCCCACAATTGATGACCAGTAGCGTCGA
GGGCGCGCTCGAGCCGCGCCTCGTTTGGCTGCAGGACACGCTGCAGATCG
GCGCTGGTACGCTACGCGAGCGAGTTCTGTCGCACCCGTGGCTGCTGAGC
CTCAGCAAAGAAGGAAAGCTTGTGCCCACGCTTGAGTTCCTGACGAACGA
CCTACTCCTGGACGAGGTGAGCGTGAGAAAGACGCTCTTCAGGCAGCCGC
GGATGTTTCTCACACCGCTCAGGCCGGCCCTCGCCTCCACCACCGAGTGG
CTCTGTCGGAGCTTGGGGATGATGGAAGCTGAGGCGATGGTTGCGGTGAG
GAAGGACGCACGGCTCCTGCTGCGGAGCCCCCTGGTGCTGCAGACCAAGG
TGGACTTCTTCAGGAACGAGATGAGCGCGTCTCGCGAGGACATGAAGGAA
ATCTTGCTGAACAGCCCCAACGTCTTGCTCGTGAGCGTCGATCTGGTTCT
GGAGCCTCGGGTCGCGGCGATGCGCGAGGCGGGGATTGAGCCCTCTTTCG
CTCTGCACTGGAACGTGGTAGTGTTCGGGCCGGCAGGGGAGGAGGGCTTC
GATGGTTGGCTTTCAAGGCAGGCGAGGAGGCGCTACAGGGGCAGGGGGTG
GAGTGATTCAATTGGTTCCAGTCGAACCCCATAA
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