prot_H-elongata_contig18897.5188.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18897.5188.1
Unique Nameprot_H-elongata_contig18897.5188.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length489
Homology
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BLAST of mRNA_H-elongata_contig18897.5188.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.170e-22
Identity = 238/385 (61.82%), Postives = 271/385 (70.39%), Query Frame = 0 
Query:   90 NAKVPRFQPFGRAGGEGGRVAEDVFEQFGVGGAPRFSRAAVATPEEERSVLKWLELAVKMRPRAVAEMLEREPRVVQQSLEAMGRRLTWLKDRLRLSEEQVRSLVHRRPSLLCR---DGMESKXXXXXXXXXXXXXXXXXXXXXXXXXLSAGIEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVEGALEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMMEAEAMVAVRKDARLLLRSPLVLQTKVDFFRNEMSASREDMKEILLNSPNVLLVSVDLVLEPRVAAMREAGIEPSFALHWNVVVFGPAGEEGFDGWLSRQARR 471
            NA  PRFQPFGRAGGEG +VAE ++E FG+    ++S  A    +E + VL WLE  V+M  RA+A+M+E+EPR+ +Q   A+  RL                     PS+LCR   D ME K XXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 LLLRS  VL  KV FF  EM A+ ED++ +L+ SPN LL+S+DL+L PRVA +++AG++ SF+ HWN + FGP GE  FD W+ RQA R
Sbjct:   72 NADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEAT---DERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEA-FDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18897.5188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI1.170e-2261.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 155..186
e-value: 120.0
score: 11.2
coord: 410..441
e-value: 22.0
score: 14.0
coord: 374..405
e-value: 260.0
score: 8.5
coord: 300..332
e-value: 1.3
score: 18.1
coord: 191..220
e-value: 110.0
score: 11.4
coord: 225..258
e-value: 440.0
score: 6.6
coord: 337..369
e-value: 1300.0
score: 2.9
coord: 263..295
e-value: 6.1
score: 15.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 148..287
e-value: 4.8E-13
score: 48.7
coord: 298..444
e-value: 6.1E-9
score: 35.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 125..241
e-value: 2.4E-15
score: 58.4
coord: 244..443
e-value: 2.6E-24
score: 87.8
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 134..293
coord: 265..430
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 134..293
coord: 265..430

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18897contigH-elongata_contig18897:933..2399 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18897.5188.1mRNA_H-elongata_contig18897.5188.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18897 735..3149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18897.5188.1 ID=prot_H-elongata_contig18897.5188.1|Name=mRNA_H-elongata_contig18897.5188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=489bp
MFPVASARRTVVASAVYLVRGGGLRDYQCASFACRRASSSAVTDRFSLES
PSPRMRARPGDGKASRRGRRRRETAREEASSALERQPQENAKVPRFQPFG
RAGGEGGRVAEDVFEQFGVGGAPRFSRAAVATPEEERSVLKWLELAVKMR
PRAVAEMLEREPRVVQQSLEAMGRRLTWLKDRLRLSEEQVRSLVHRRPSL
LCRDGMESKVRWLQEALGVDDDQVASMVTSAPNLLSAGIEGGGLETKLEW
LAKRLRLSRKELVLVVTSCPQLMTSSVEGALEPRLVWLQDTLQIGAGTLR
ERVLSHPWLLSLSKEGKLVPTLEFLTNDLLLDEVSVRKTLFRQPRMFLTP
LRPALASTTEWLCRSLGMMEAEAMVAVRKDARLLLRSPLVLQTKVDFFRN
EMSASREDMKEILLNSPNVLLVSVDLVLEPRVAAMREAGIEPSFALHWNV
VVFGPAGEEGFDGWLSRQARRRYRGRGWSDSIGSSRTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf