mRNA_H-elongata_contig188520.5162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188520.5162.1
Unique NamemRNA_H-elongata_contig188520.5162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.170e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   34 LKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGGSLGMTREIRFVHPFSAPIG 207
            L+ FF++F +NDAEKG+PAFH S GDS+V+ATPWKVAGG+LGMTREIRFVHP SAPIG
Sbjct:  351 LQDFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIG 408
[Close]
BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.170e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   34 LKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGGSLGMTREIRFVHPFSAPIG 207
            L+ FF++F +NDAEKG+PAFH S GDS+V+ATPWKVAGG+LGMTREIRFVHP SAPIG
Sbjct:  460 LQEFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIG 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKF6_ECTSI2.170e-2377.59VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Q2_9PHAE2.170e-2377.59VASt domain-containing protein (Fragment) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188520contigH-elongata_contig188520:1..207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7FKF6
Preferred nameVAD1
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.5870957-CDS-H-elongata_contig188520:0..2071622930078.5870957-CDS-H-elongata_contig188520:0..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188520 1..207 -
1691679272.5428665-CDS-H-elongata_contig188520:0..2071691679272.5428665-CDS-H-elongata_contig188520:0..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188520 1..207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188520.5162.1prot_H-elongata_contig188520.5162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188520 1..207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188520.5162.1

>prot_H-elongata_contig188520.5162.1 ID=prot_H-elongata_contig188520.5162.1|Name=mRNA_H-elongata_contig188520.5162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LSGSESLCRVPLKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGG
SLGMTREIRFVHPFSAPIG
back to top

mRNA from alignment at H-elongata_contig188520:1..207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188520.5162.1 ID=mRNA_H-elongata_contig188520.5162.1|Name=mRNA_H-elongata_contig188520.5162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig188520:1..207- (Himanthalia elongata Himel1 dioecious)
CTTTCGGGTTCCGAATCCTTGTGTCGTGTGCCCTTGAAGACTTTTTTCGA
GATGTTCTTCGCCAACGATGCGGAGAAGGGGTTGCCGGCGTTCCACGTGT
CCGAAGGCGACTCGGAAGTGCAGGCTACGCCTTGGAAGGTGGCAGGAGGC
AGCCTGGGCATGACTCGCGAAATCCGCTTCGTCCACCCTTTCAGTGCTCC
TATCGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig188520:1..207-

>mRNA_H-elongata_contig188520.5162.1 ID=mRNA_H-elongata_contig188520.5162.1|Name=mRNA_H-elongata_contig188520.5162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig188520:1..207- (Himanthalia elongata Himel1 dioecious)
CTTTCGGGTTCCGAATCCTTGTGTCGTGTGCCCTTGAAGACTTTTTTCGA
GATGTTCTTCGCCAACGATGCGGAGAAGGGGTTGCCGGCGTTCCACGTGT
CCGAAGGCGACTCGGAAGTGCAGGCTACGCCTTGGAAGGTGGCAGGAGGC
AGCCTGGGCATGACTCGCGAAATCCGCTTCGTCCACCCTTTCAGTGCTCC
TATCGGCCTTTCGGGTTCCGAATCCTTGTGTCGTGTGCCCTTGAAGACTT
TTTTCGAGATGTTCTTCGCCAACGATGCGGAGAAGGGGTTGCCGGCGTTC
CACGTGTCCGAAGGCGACTCGGAAGTGCAGGCTACGCCTTGGAAGGTGGC
AGGAGGCAGCCTGGGCATGACTCGCGAAATCCGCTTCGTCCACCCTTTCA
GTGCTCCTATCGGC
back to top