prot_H-elongata_contig188520.5162.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig188520.5162.1
Unique Nameprot_H-elongata_contig188520.5162.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
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BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.170e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0 
Query:   12 LKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGGSLGMTREIRFVHPFSAPIG 69
            L+ FF++F +NDAEKG+PAFH S GDS+V+ATPWKVAGG+LGMTREIRFVHP SAPIG
Sbjct:  351 LQDFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIG 408
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BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.170e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0 
Query:   12 LKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGGSLGMTREIRFVHPFSAPIG 69
            L+ FF++F +NDAEKG+PAFH S GDS+V+ATPWKVAGG+LGMTREIRFVHP SAPIG
Sbjct:  460 LQEFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISAPIG 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188520.5162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKF6_ECTSI2.170e-2377.59VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Q2_9PHAE2.170e-2377.59VASt domain-containing protein (Fragment) n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031968VASt domainPFAMPF16016VAStcoord: 8..69
e-value: 1.2E-8
score: 35.5
IPR031968VASt domainPROSITEPS51778VASTcoord: 1..69
score: 12.657

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188520contigH-elongata_contig188520:1..207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188520.5162.1mRNA_H-elongata_contig188520.5162.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig188520 1..207 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig188520.5162.1 ID=prot_H-elongata_contig188520.5162.1|Name=mRNA_H-elongata_contig188520.5162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LSGSESLCRVPLKTFFEMFFANDAEKGLPAFHVSEGDSEVQATPWKVAGG
SLGMTREIRFVHPFSAPIG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031968VASt