prot_H-elongata_contig187316.5107.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187316.5107.1
Unique Nameprot_H-elongata_contig187316.5107.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 87.4 bits (215), Expect = 6.100e-18
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    9 EWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 99
            E PQWK AI  E+D  +    W++V+ P G   LG R +FKRK++ DG I+KYK RLV +GFRQ +G+ Y +  SP    TSIR+VL++ A
Sbjct:  282 EGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAA 372          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: UPI001CB79F24 (hypothetical protein n=1 Tax=Blastococcus sp. CPCC 205250 TaxID=2732513 RepID=UPI001CB79F24)

HSP 1 Score: 83.6 bits (205), Expect = 8.840e-18
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA 100
            +A+AS +  QW+ A+  EM        W +V+ PK +  +G + VFKRK D +G+I KYK RLVA+G+ Q++G+ Y E  SP    TSIR VLS  AA
Sbjct:   83 EARASEDANQWEEAMKDEMKSLDQNHTWNLVKLPKDRKAIGCKWVFKRKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAA 180          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI)

HSP 1 Score: 86.3 bits (212), Expect = 1.470e-17
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 102
            K + S+EW QWK+A+  E+      G W +VE   G  ++G+R V+K K+D+DG   +YK RLVAQGF Q +GI ++E  +P     ++R+V+S+  ALG
Sbjct:   30 KNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALG 129          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI)

HSP 1 Score: 86.3 bits (212), Expect = 1.570e-17
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 102
            K + S+EW QWK+A+  E+      G W +VE   G  ++G+R V+K K+D+DG   +YK RLVAQGF Q +GI ++E  +P     ++R+V+S+  ALG
Sbjct:  699 KNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALG 798          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 85.9 bits (211), Expect = 2.110e-17
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 102
            +AQAS +WPQW+RAI  EM+   A G + +V +P G  ++G+++VF RK + +G + + K R+VAQGF Q+ GI + E  +P    +S+R+++++ A  G
Sbjct:  327 EAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFG 426          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 80.9 bits (198), Expect = 2.890e-17
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0
Query:   13 WKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMI 98
            W+RAI RE++     G W+ V +P+G   + TR VF +K D DG++EKYK RLV +GFRQ  G+++ E  +PTP   ++R+ L+ +
Sbjct:   24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGSATLRLFLASV 109          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 85.5 bits (210), Expect = 2.950e-17
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 99
            +AQ + +WP+W+ AI  EMD   A   + +V RP G  ++G+R+VF RK D DG I++ K R+VAQGF Q+ G+ Y E  +P    +S+R++L++ A
Sbjct:  993 EAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAA 1089          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 85.1 bits (209), Expect = 3.860e-17
Identity = 38/89 (42.70%), Postives = 62/89 (69.66%), Query Frame = 0
Query:   12 QWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA 100
            +W++A+  E +  ++ G W+++E P  +  +G++ VFK K ++ G +EKYK RLVAQGF+QVKG+ YEE  SP     SIR++L++ +A
Sbjct:  113 EWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASA 201          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U2V9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U2V9_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 3.900e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:    3 KAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 102
            K + S EW QWK+A+  E+      G W +VE   G  ++G+R V+K K+D+DG   +YK RLVAQGF Q +GI ++E  +P     ++R+V+S+  ALG
Sbjct:  228 KNRPSVEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALG 327          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO)

HSP 1 Score: 85.1 bits (209), Expect = 3.950e-17
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 0
Query:    1 MGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 102
            M  A A  +  +W+RAIA EM   I    W +V+RP+G  ++G+R+V + K   DG +E+ K RLVAQGF Q  GIH++E  +P    +SIR++ S+ A  G
Sbjct:  738 MKHAMAGHDAGEWRRAIAAEMKSVIRNDTWTLVDRPRGCKIVGSRIVLRNKFKPDGTLERRKARLVAQGFSQQPGIHFQETFAPVARFSSIRIMASLAARYG 839          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6LDN8_9ASTR6.100e-1848.35Integrase catalytic domain-containing protein n=5 ... [more]
UPI001CB79F248.840e-1844.90hypothetical protein n=1 Tax=Blastococcus sp. CPCC... [more]
A0A177U0B1_9BASI1.470e-1742.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177VSQ5_9BASI1.570e-1742.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A5K1K0E1_9APHY2.110e-1740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2C5X5E6_9PEZI2.890e-1743.02Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
A0A1M2V8C6_TRAPU2.950e-1742.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A075B0V5_ROZAC3.860e-1742.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U2V9_9BASI3.900e-1742.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HVS3_TENMO3.950e-1742.16Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 29..99
e-value: 1.6E-16
score: 60.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..102
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 6..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187316contigH-elongata_contig187316:5..310 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187316.5107.1mRNA_H-elongata_contig187316.5107.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187316 5..328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187316.5107.1 ID=prot_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKR
KIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA
LG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like