mRNA_H-elongata_contig187316.5107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187316.5107.1
Unique NamemRNA_H-elongata_contig187316.5107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 4.670e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 315
            EP+T   A  + E PQWK AI  E+D  +    W++V+ P G   LG R +FKRK++ DG I+KYK RLV +GFRQ +G+ Y +  SP    TSIR+VL++ A
Sbjct:  270 EPQTYRDAVTTLEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAA 372          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A481SH62_9BASI (Putative Ty1-copia subclass retrotransposon protein n=1 Tax=Ustilago esculenta TaxID=185366 RepID=A0A481SH62_9BASI)

HSP 1 Score: 89.4 bits (220), Expect = 1.610e-18
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 DPEPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSM 309
            D EP+T+ +AQ   +WP+W+ AI +E++       W VV  P    ++G R VFK K   DG I KYK RLVAQG+ QV GI+Y+E  +P     ++RM++ M
Sbjct:  507 DDEPRTILQAQCQPDWPKWQEAIQKELNSHQENNTWTVVNAPNNANIIGCRWVFKVKRKGDGTINKYKARLVAQGYTQVHGINYKETFTPVVKMATLRMLMIM 609          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 84.0 bits (206), Expect = 2.480e-18
Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLS 306
            +P+T+ +A  S +  +WK A+  E++       W +V RP+G+ ++  + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E  SP     SIR +L+
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLA 129          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 88.6 bits (218), Expect = 3.060e-18
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 315
            EP T+  A    +W +W  A+  E+D  +  G W++ E P+G+ ++G+R VFK K+D  G + +YK RLVAQGF Q+ G+ Y+E  SP     SIR +L++ A
Sbjct:  606 EPNTLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISIRTLLALAA 708          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 88.6 bits (218), Expect = 3.070e-18
Identity = 40/106 (37.74%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
            EP T  +A+  S+W +W +A+  +MD  +    W +V+ P G+  +G+R V+K K+D++G+ +++K RLVAQGF QV G+ Y E  +P     S+R++L++ A  G
Sbjct:  731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFG 836          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177VQ04_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VQ04_9BASI)

HSP 1 Score: 87.8 bits (216), Expect = 5.690e-18
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
            EPKT+  A   S+W QW +A+  EM+     G W + + P  + ++G+R VFK K+D +G + +YK RLVAQGF Q+ G+ Y E  SP     +IR +L++ A  G
Sbjct:  609 EPKTLKDAMRRSDWAQWLQAMREEMESHSEMGTWVLEKVPDDRELVGSRWVFKLKLDSEGAVSRYKARLVAQGFSQIFGVDYNETYSPVTRFVTIRTLLALAAYFG 714          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 83.6 bits (205), Expect = 6.300e-18
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSM 309
            EP T+ +A +SSE  +WK A+ REM+   A  V+ +VE PK K ++G++ +F+RKI+ DG +E+YK RLVAQ F Q  G+ Y+E         SIR V+++
Sbjct:    5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETFCRVVCFESIRSVIAV 105          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-17
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA 318
            +P+T  +A  S    +W++A+  E +  ++ G W+++E P  +  +G++ VFK K ++ G +EKYK RLVAQGF+QVKG+ YEE  SP     SIR++L++ +A
Sbjct:   98 DPQTFSEAINSDLENEWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASA 201          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 1.040e-17
Identity = 41/106 (38.68%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
            +P ++ +AQAS +WPQW+RAI  EM+   A G + +V +P G  ++G+++VF RK + +G + + K R+VAQGF Q+ GI + E  +P    +S+R+++++ A  G
Sbjct:  321 DPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFG 426          
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 87.0 bits (214), Expect = 1.070e-17
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 DPEPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
            D EPKT+ +A+   +WP W+ AI +E+      G W + + P G+  +G++ VFK K+  DG ++KYK RLVAQGF Q  G+ Y+E  +P     ++R+++++ A  G
Sbjct:  827 DQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEG 934          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6LDN8_9ASTR4.670e-1946.60Integrase catalytic domain-containing protein n=5 ... [more]
A0A481SH62_9BASI1.610e-1842.72Putative Ty1-copia subclass retrotransposon protei... [more]
UPI0015A81C6A2.480e-1841.00uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A177U095_9BASI3.060e-1840.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A177U1E5_9BASI3.070e-1837.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A177VQ04_9BASI5.690e-1840.57Integrase catalytic domain-containing protein n=2 ... [more]
A0A1X7VXK3_AMPQE6.300e-1843.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B0V5_ROZAC1.020e-1740.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5K1K0E1_9APHY1.040e-1738.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5C3E5T1_9BASI1.070e-1737.96Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187316contigH-elongata_contig187316:5..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog15368.BRADI5G07075.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.5675213-CDS-H-elongata_contig187316:4..3101622930070.5675213-CDS-H-elongata_contig187316:4..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187316 5..310 -
1691679269.5748484-CDS-H-elongata_contig187316:4..3101691679269.5748484-CDS-H-elongata_contig187316:4..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187316 5..310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.5832925-UTR-H-elongata_contig187316:310..3281622930070.5832925-UTR-H-elongata_contig187316:310..328Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187316 311..328 -
1691679269.589824-UTR-H-elongata_contig187316:310..3281691679269.589824-UTR-H-elongata_contig187316:310..328Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187316 311..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187316.5107.1prot_H-elongata_contig187316.5107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187316 5..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187316.5107.1

>prot_H-elongata_contig187316.5107.1 ID=prot_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKR
KIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA
LG
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mRNA from alignment at H-elongata_contig187316:5..328-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187316.5107.1 ID=mRNA_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig187316:5..328- (Himanthalia elongata Himel1 dioecious)
GACCCGGAGCCGAAAACCATGGGCAAGGCGCAAGCGTCGTCGGAGTGGCC GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATTGCTCGAG GCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACAATGTTGGGCACG AGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTA TAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACT ACGAGGAATTCTCCTCTCCGACTCCTCCTCAGACCAGCATTAGGATGGTA CTCAGCATGATCGCGGCTCTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig187316:5..328-

>mRNA_H-elongata_contig187316.5107.1 ID=mRNA_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig187316:5..328- (Himanthalia elongata Himel1 dioecious)
ATGGGCAAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAATTGCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACAATGTTGGGCACGAGAGTAGTTTTCAAGCGC
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATTCTCCTCTC
CGACTCCTCCTCAGACCAGCATTAGGATGGTACTCAGCATGATCGCGGCT
CTCGGCATGGGCAAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAG
GGCGATCGCGCGCGAGATGGATGGGCAAATTGCTCGAGGCGTGTGGCAGG
TGGTGGAGCGCCCAAAAGGGAAGACAATGTTGGGCACGAGAGTAGTTTTC
AAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCT
CGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATTCT
CCTCTCCGACTCCTCCTCAGACCAGCATTAGGATGGTACTCAGCATGATC
GCGGCTCTCGGC
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