mRNA_H-elongata_contig187316.5107.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR) HSP 1 Score: 90.9 bits (224), Expect = 4.670e-19 Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 315
EP+T A + E PQWK AI E+D + W++V+ P G LG R +FKRK++ DG I+KYK RLV +GFRQ +G+ Y + SP TSIR+VL++ A
Sbjct: 270 EPQTYRDAVTTLEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAA 372
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A481SH62_9BASI (Putative Ty1-copia subclass retrotransposon protein n=1 Tax=Ustilago esculenta TaxID=185366 RepID=A0A481SH62_9BASI) HSP 1 Score: 89.4 bits (220), Expect = 1.610e-18 Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1 DPEPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSM 309
D EP+T+ +AQ +WP+W+ AI +E++ W VV P ++G R VFK K DG I KYK RLVAQG+ QV GI+Y+E +P ++RM++ M
Sbjct: 507 DDEPRTILQAQCQPDWPKWQEAIQKELNSHQENNTWTVVNAPNNANIIGCRWVFKVKRKGDGTINKYKARLVAQGYTQVHGINYKETFTPVVKMATLRMLMIM 609
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 84.0 bits (206), Expect = 2.480e-18 Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLS 306
+P+T+ +A S + +WK A+ E++ W +V RP+G+ ++ + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E SP SIR +L+
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLA 129
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 88.6 bits (218), Expect = 3.060e-18 Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIA 315
EP T+ A +W +W A+ E+D + G W++ E P+G+ ++G+R VFK K+D G + +YK RLVAQGF Q+ G+ Y+E SP SIR +L++ A
Sbjct: 606 EPNTLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISIRTLLALAA 708
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 88.6 bits (218), Expect = 3.070e-18 Identity = 40/106 (37.74%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
EP T +A+ S+W +W +A+ +MD + W +V+ P G+ +G+R V+K K+D++G+ +++K RLVAQGF QV G+ Y E +P S+R++L++ A G
Sbjct: 731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFG 836
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A177VQ04_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VQ04_9BASI) HSP 1 Score: 87.8 bits (216), Expect = 5.690e-18 Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
EPKT+ A S+W QW +A+ EM+ G W + + P + ++G+R VFK K+D +G + +YK RLVAQGF Q+ G+ Y E SP +IR +L++ A G
Sbjct: 609 EPKTLKDAMRRSDWAQWLQAMREEMESHSEMGTWVLEKVPDDRELVGSRWVFKLKLDSEGAVSRYKARLVAQGFSQIFGVDYNETYSPVTRFVTIRTLLALAAYFG 714
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 83.6 bits (205), Expect = 6.300e-18 Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSM 309
EP T+ +A +SSE +WK A+ REM+ A V+ +VE PK K ++G++ +F+RKI+ DG +E+YK RLVAQ F Q G+ Y+E SIR V+++
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETFCRVVCFESIRSVIAV 105
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC) HSP 1 Score: 87.0 bits (214), Expect = 1.020e-17 Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAA 318
+P+T +A S +W++A+ E + ++ G W+++E P + +G++ VFK K ++ G +EKYK RLVAQGF+QVKG+ YEE SP SIR++L++ +A
Sbjct: 98 DPQTFSEAINSDLENEWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASA 201
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY) HSP 1 Score: 87.0 bits (214), Expect = 1.040e-17 Identity = 41/106 (38.68%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 7 EPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
+P ++ +AQAS +WPQW+RAI EM+ A G + +V +P G ++G+++VF RK + +G + + K R+VAQGF Q+ GI + E +P +S+R+++++ A G
Sbjct: 321 DPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFG 426
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 87.0 bits (214), Expect = 1.070e-17 Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 DPEPKTMGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEFSSPTPPQTSIRMVLSMIAALG 324
D EPKT+ +A+ +WP W+ AI +E+ G W + + P G+ +G++ VFK K+ DG ++KYK RLVAQGF Q G+ Y+E +P ++R+++++ A G
Sbjct: 827 DQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEG 934 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187316.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig187316.5107.1 >prot_H-elongata_contig187316.5107.1 ID=prot_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MGKAQASSEWPQWKRAIAREMDGQIARGVWQVVERPKGKTMLGTRVVFKRback to top mRNA from alignment at H-elongata_contig187316:5..328- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig187316.5107.1 ID=mRNA_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig187316:5..328- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig187316:5..328- >mRNA_H-elongata_contig187316.5107.1 ID=mRNA_H-elongata_contig187316.5107.1|Name=mRNA_H-elongata_contig187316.5107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig187316:5..328- (Himanthalia elongata Himel1 dioecious)back to top |