mRNA_H-elongata_contig186625.5084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186625.5084.1
Unique NamemRNA_H-elongata_contig186625.5084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: D8LFB6_ECTSI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.560e-33
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            +VAVAARR+DRLDALVEEL L G  GVCAVRMDVRDETSIKAGV++VE+ +GPIDVLVNNAGVAV   SLKQT+ +WEKV
Sbjct:   38 KVAVAARRVDRLDALVEELTLGGAAGVCAVRMDVRDETSIKAGVKQVEQILGPIDVLVNNAGVAVQSPSLKQTRREWEKV 117          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A836C7D9_9STRA (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7D9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-15
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 QVAVAARRLDRLDALVEELKLVGVEG--VCAVRMDVRDETSIKAGVEKV-----EETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            +V VAARR+++L  LV EL+  GV    +CAVRMDV+D  SI+A + K      ++ +GPI +LVNNAGVAV + +L+QT +DW +V
Sbjct:   30 KVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRV 116          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: W3RIU7_9BRAD (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RIU7_9BRAD)

HSP 1 Score: 76.3 bits (186), Expect = 5.690e-15
Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            V +AAR++D+L++L  ELK+ G + + AVRMDV D  SI   ++  E+ +GP+ VL+NNAGV V + ++ QT+ DW+KV
Sbjct:   36 VVLAARQVDKLESLASELKMNGGQAI-AVRMDVTDGGSIVQALDTAEKALGPVSVLINNAGVVVEKAAVDQTEADWDKV 113          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A2T5VFV6_9HYPH (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Breoghania corrubedonensis TaxID=665038 RepID=A0A2T5VFV6_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 2.260e-14
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            VAVAARR+DRL+ LV ELK  G     A+ +DV +ETS+K       E +G +DVLVNNAG+A   +SL QT ED++ V
Sbjct:   36 VAVAARRIDRLEQLVGELKAAGAPEAVALPLDVTNETSVKDCTAAAAEALGGLDVLVNNAGMASEGLSLDQTIEDFDAV 114          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A161R767_9BRAD (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A161R767_9BRAD)

HSP 1 Score: 72.8 bits (177), Expect = 1.160e-13
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            VA+AAR+ D+L +L EE+   G   V AV+MDV D  SI    +  EE +GPI VL+NNAG+AV ++++ QT+ DW+ V
Sbjct:   36 VALAARQTDKLKSLQEEITGKGGRAV-AVQMDVTDMASIGGAFDAAEEALGPISVLINNAGIAVEKLAVDQTEADWDSV 113          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A495ZJE2_9BACT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZJE2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-13
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            QVA+AAR +DRL+  V+E++  G   V A+++DV D  S+K  VE  E  +GPI++LVNNAG+AV++  L+  +EDW+ V
Sbjct:   40 QVALAARGIDRLEVAVKEIEGSGGCAV-AIQVDVTDGKSVKRCVETAENALGPINILVNNAGIAVTKPLLEHAEEDWDSV 118          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A3N1M7B4_9PROT (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1M7B4_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 2.260e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            +VAVAARR DRL  L  E+   G + +  V +DV D  SI A + +V   +GPID+LVNN+GVA ++ +L+ T EDW+ V
Sbjct:   33 RVAVAARRTDRLQDLAREIAAAGGQAL-PVALDVTDPASIDAAIARVAAELGPIDILVNNSGVATAKPALETTAEDWDGV 111          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: Q07JP2_RHOP5 (Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07JP2_RHOP5)

HSP 1 Score: 71.6 bits (174), Expect = 3.150e-13
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            VA+AAR++D+L++L  E+   G      VRMDV D  SI   +++ E  +GP+ VL+NNAG+AV +++++QT+ DW+ V
Sbjct:   36 VALAARQVDKLNSLQAEITTAGGRAA-TVRMDVTDLASIAQAIDEAEAALGPLTVLINNAGIAVEKLAIEQTEADWDAV 113          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A2E0H606_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A2E0H606_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 6.060e-13
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            +VA+AAR++ ++ +L EEL+  G +  CAV MDV D+ SI   V+ VE  +GPIDVLVNNAGVA+++  L  T+E+++ V
Sbjct:   35 RVALAARQVSKITSLKEELENKGGKA-CAVEMDVLDQQSIGNCVDIVERDLGPIDVLVNNAGVAINKFFLDVTEEEYDSV 113          
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: UPI0016666175 (SDR family oxidoreductase n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI0016666175)

HSP 1 Score: 70.9 bits (172), Expect = 6.360e-13
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
            V+V ARR DRL +LVEEL+ +G     AV +DV DE S+ A V + E  +GPIDV+VNNAG++    +L+ +  D++ V
Sbjct:   36 VSVGARRADRLASLVEELRQLGAAQALAVSLDVADEASVAAAVSEAEAALGPIDVVVNNAGISRPYPALQLSAPDFDDV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB6_ECTSI7.560e-3378.752,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=... [more]
A0A836C7D9_9STRA2.230e-1549.432,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (F... [more]
W3RIU7_9BRAD5.690e-1546.842-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=1 ... [more]
A0A2T5VFV6_9HYPH2.260e-1451.90NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
A0A161R767_9BRAD1.160e-1348.102-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Tardip... [more]
A0A495ZJE2_9BACT1.740e-1347.502-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Candid... [more]
A0A3N1M7B4_9PROT2.260e-1347.50NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
Q07JP2_RHOP53.150e-1343.04Short-chain dehydrogenase/reductase SDR n=1 Tax=Rh... [more]
A0A2E0H606_9PROT6.060e-1348.752-deoxy-D-gluconate 3-dehydrogenase n=5 Tax=Proteo... [more]
UPI00166661756.360e-1346.84SDR family oxidoreductase n=1 Tax=Chelatococcus re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186625contigH-elongata_contig186625:250..700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LFB6
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.100
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
Ec32 orthologEc-01_004330.1
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930068.046621-CDS-H-elongata_contig186625:249..3511622930068.046621-CDS-H-elongata_contig186625:249..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186625 250..351 -
1691679268.5142066-CDS-H-elongata_contig186625:249..3511691679268.5142066-CDS-H-elongata_contig186625:249..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186625 250..351 -
1622930068.0639424-CDS-H-elongata_contig186625:562..7001622930068.0639424-CDS-H-elongata_contig186625:562..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186625 563..700 -
1691679268.5254672-CDS-H-elongata_contig186625:562..7001691679268.5254672-CDS-H-elongata_contig186625:562..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186625 563..700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186625.5084.1prot_H-elongata_contig186625.5084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186625 250..700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186625.5084.1

>prot_H-elongata_contig186625.5084.1 ID=prot_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEET
MGPIDVLVNNAGVAVSRISLKQTKEDWEKV
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mRNA from alignment at H-elongata_contig186625:250..700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186625.5084.1 ID=mRNA_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=451bp|location=Sequence derived from alignment at H-elongata_contig186625:250..700- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCCGTAGCGGCTCGACGGCTGGATCGCCTGGATGCATTGGTGGA AGAGCTCAAGCTAGTAGGGGTGGAGGGCGTCTGCGCGGTGCGAATGGACG TTCGTGACGAAACCAGCATAAAGGCTGGGGTTGAAAAGGTACCTAAAACG TGGACTTTTTGGATGCCTATAATTCTAAATACAAAGGCTGTATGAATAGG CATGGTGTCCATGCGCCCAAACGGGGCTGACAAGCTTTTATACCGAAAAC TGGTGATCTGAAGAGTCTCAACGATGAGCCCTGCCGGAAGTTGAACACGC GACCTCGAGTGGTGACATATGTTTGCGCACGTTGCGCTGGATGGATCAGG TGGAGGAAACTATGGGGCCAATCGATGTCCTGGTGAACAACGCGGGTGTT GCCGTGTCAAGGATATCGCTCAAGCAAACCAAAGAAGATTGGGAAAAGGT G
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Coding sequence (CDS) from alignment at H-elongata_contig186625:250..700-

>mRNA_H-elongata_contig186625.5084.1 ID=mRNA_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig186625:250..700- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCCGTAGCGGCTCGACGGCTGGATCGCCTGGATGCATTGGTGGA
AGAGCTCAAGCTAGTAGGGGTGGAGGGCGTCTGCGCGGTGCGAATGGACG
TTCGTGACGAAACCAGCATAAAGGCTGGGGTTGAAAAGCAGGTGGCCGTA
GCGGCTCGACGGCTGGATCGCCTGGATGCATTGGTGGAAGAGCTCAAGCT
AGTAGGGGTGGAGGGCGTCTGCGCGGTGCGAATGGACGTTCGTGACGAAA
CCAGCATAAAGGCTGGGGTTGAAAAGGTGGAGGAAACTATGGGGCCAATC
GATGTCCTGGTGAACAACGCGGGTGTTGCCGTGTCAAGGATATCGCTCAA
GCAAACCAAAGAAGATTGGGAAAAGGTGGTGGAGGAAACTATGGGGCCAA
TCGATGTCCTGGTGAACAACGCGGGTGTTGCCGTGTCAAGGATATCGCTC
AAGCAAACCAAAGAAGATTGGGAAAAGGTG
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