mRNA_H-elongata_contig186625.5084.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: D8LFB6_ECTSI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB6_ECTSI) HSP 1 Score: 122 bits (307), Expect = 7.560e-33 Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query: 1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
+VAVAARR+DRLDALVEEL L G GVCAVRMDVRDETSIKAGV++VE+ +GPIDVLVNNAGVAV SLKQT+ +WEKV
Sbjct: 38 KVAVAARRVDRLDALVEELTLGGAAGVCAVRMDVRDETSIKAGVKQVEQILGPIDVLVNNAGVAVQSPSLKQTRREWEKV 117
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A836C7D9_9STRA (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7D9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.230e-15 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 QVAVAARRLDRLDALVEELKLVGVEG--VCAVRMDVRDETSIKAGVEKV-----EETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
+V VAARR+++L LV EL+ GV +CAVRMDV+D SI+A + K ++ +GPI +LVNNAGVAV + +L+QT +DW +V
Sbjct: 30 KVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRV 116
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: W3RIU7_9BRAD (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RIU7_9BRAD) HSP 1 Score: 76.3 bits (186), Expect = 5.690e-15 Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
V +AAR++D+L++L ELK+ G + + AVRMDV D SI ++ E+ +GP+ VL+NNAGV V + ++ QT+ DW+KV
Sbjct: 36 VVLAARQVDKLESLASELKMNGGQAI-AVRMDVTDGGSIVQALDTAEKALGPVSVLINNAGVVVEKAAVDQTEADWDKV 113
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A2T5VFV6_9HYPH (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Breoghania corrubedonensis TaxID=665038 RepID=A0A2T5VFV6_9HYPH) HSP 1 Score: 74.7 bits (182), Expect = 2.260e-14 Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
VAVAARR+DRL+ LV ELK G A+ +DV +ETS+K E +G +DVLVNNAG+A +SL QT ED++ V
Sbjct: 36 VAVAARRIDRLEQLVGELKAAGAPEAVALPLDVTNETSVKDCTAAAAEALGGLDVLVNNAGMASEGLSLDQTIEDFDAV 114
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A161R767_9BRAD (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A161R767_9BRAD) HSP 1 Score: 72.8 bits (177), Expect = 1.160e-13 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
VA+AAR+ D+L +L EE+ G V AV+MDV D SI + EE +GPI VL+NNAG+AV ++++ QT+ DW+ V
Sbjct: 36 VALAARQTDKLKSLQEEITGKGGRAV-AVQMDVTDMASIGGAFDAAEEALGPISVLINNAGIAVEKLAVDQTEADWDSV 113
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A495ZJE2_9BACT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZJE2_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.740e-13 Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
QVA+AAR +DRL+ V+E++ G V A+++DV D S+K VE E +GPI++LVNNAG+AV++ L+ +EDW+ V
Sbjct: 40 QVALAARGIDRLEVAVKEIEGSGGCAV-AIQVDVTDGKSVKRCVETAENALGPINILVNNAGIAVTKPLLEHAEEDWDSV 118
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A3N1M7B4_9PROT (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1M7B4_9PROT) HSP 1 Score: 72.0 bits (175), Expect = 2.260e-13 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
+VAVAARR DRL L E+ G + + V +DV D SI A + +V +GPID+LVNN+GVA ++ +L+ T EDW+ V
Sbjct: 33 RVAVAARRTDRLQDLAREIAAAGGQAL-PVALDVTDPASIDAAIARVAAELGPIDILVNNSGVATAKPALETTAEDWDGV 111
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: Q07JP2_RHOP5 (Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07JP2_RHOP5) HSP 1 Score: 71.6 bits (174), Expect = 3.150e-13 Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
VA+AAR++D+L++L E+ G VRMDV D SI +++ E +GP+ VL+NNAG+AV +++++QT+ DW+ V
Sbjct: 36 VALAARQVDKLNSLQAEITTAGGRAA-TVRMDVTDLASIAQAIDEAEAALGPLTVLINNAGIAVEKLAIEQTEADWDAV 113
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: A0A2E0H606_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A2E0H606_9PROT) HSP 1 Score: 70.9 bits (172), Expect = 6.060e-13 Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 1 QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
+VA+AAR++ ++ +L EEL+ G + CAV MDV D+ SI V+ VE +GPIDVLVNNAGVA+++ L T+E+++ V
Sbjct: 35 RVALAARQVSKITSLKEELENKGGKA-CAVEMDVLDQQSIGNCVDIVERDLGPIDVLVNNAGVAINKFFLDVTEEEYDSV 113
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Match: UPI0016666175 (SDR family oxidoreductase n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI0016666175) HSP 1 Score: 70.9 bits (172), Expect = 6.360e-13 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 4 VAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETMGPIDVLVNNAGVAVSRISLKQTKEDWEKV 240
V+V ARR DRL +LVEEL+ +G AV +DV DE S+ A V + E +GPIDV+VNNAG++ +L+ + D++ V
Sbjct: 36 VSVGARRADRLASLVEELRQLGAAQALAVSLDVADEASVAAAVSEAEAALGPIDVVVNNAGISRPYPALQLSAPDFDDV 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186625.5084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig186625.5084.1 >prot_H-elongata_contig186625.5084.1 ID=prot_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp QVAVAARRLDRLDALVEELKLVGVEGVCAVRMDVRDETSIKAGVEKVEETback to top mRNA from alignment at H-elongata_contig186625:250..700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig186625.5084.1 ID=mRNA_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=451bp|location=Sequence derived from alignment at H-elongata_contig186625:250..700- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig186625:250..700- >mRNA_H-elongata_contig186625.5084.1 ID=mRNA_H-elongata_contig186625.5084.1|Name=mRNA_H-elongata_contig186625.5084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig186625:250..700- (Himanthalia elongata Himel1 dioecious)back to top |