mRNA_H-elongata_contig18660.5083.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18660.5083.1
Unique NamemRNA_H-elongata_contig18660.5083.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.630e-35
Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  +A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct:  849 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1111          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.700e-35
Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  +A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct: 1228 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1490          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.720e-35
Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  +A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct: 1391 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1653          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.160e-35
Identity = 95/266 (35.71%), Postives = 136/266 (51.13%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD    +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  +A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct: 1248 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1510          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.080e-34
Identity = 94/265 (35.47%), Postives = 135/265 (50.94%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVS 777
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R   A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VS
Sbjct:  440 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARY-ADTEDRRSVS 701          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.350e-34
Identity = 91/266 (34.21%), Postives = 138/266 (51.88%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++++ +++ GC I R  +   L I Q  Y+DSMV+ FDV+ TS+IPA+ GV      +    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct:  403 DVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 665          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KL99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL99_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.940e-33
Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQV------PQTLGPVHTEAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            D +Q +  A + EE+++++          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ +  +  GC I R  +A  L I Q  Y+DSMV+ FDV+ TS+IPA+ GV      +    G+       G    V    R      V             H +A+ KI+ YL  T++L ITY  +G GL +  Y D+   A  + RR VSG
Sbjct:  831 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECHWCDGCAIERDVEAGTLKISQTAYIDSMVKPFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAKGSMTWVSTFSRPDVSFAVRAIARHAHATAKRHWDAIQKILGYLKGTRDLGITYK-RGSGLGLAVYVDASH-ADSEDRRSVSG 1093          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.460e-32
Identity = 90/261 (34.48%), Postives = 130/261 (49.81%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCER------STHCVQVPQTLGPVHTEAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTR 765
            D +Q    A + EE++  +          + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  +A  L I Q  Y+DSMVE FDVK TS+IPAT G       E    G+       G    V    R      +    +        H +A+ KI+ YL  T++L ITY  +G GL    Y D+      D+R
Sbjct:  958 DVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGPSVYVDASYADTEDSR 1216          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.100e-31
Identity = 85/254 (33.46%), Postives = 132/254 (51.97%), Query Frame = 1
Query:    1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYG-GKGGGLCIEAYTDSD 741
            D +Q +  A + EE++++      +    + +  + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+   +I+V++VDDILV   D+   +   A L  KF  +++ +  ++ GC I R  +A  L I Q  Y+DSMV+ FDV+ TS+IPA+ GV      +    G+       G    V    R      V       H       +A+ KI+ YL  T++L ITY  G G GL + + T+++
Sbjct:  579 DVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLSITYQRGSGLGLAVASSTEAE 831          
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.210e-31
Identity = 86/237 (36.29%), Postives = 122/237 (51.48%), Query Frame = 1
Query:   88 VERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
            ++   + IYGL QSGR W  +  +++   GF+Q KADPCVFRK VD+ A +I+V++VDDILV   D+   +   A L  KF  K++ + +++ GC I R  K   L I Q  Y+ SMV+ FDV+ TS+IPAT GV  +   E    G+       G    V           V       H       +A+ K + YL  T++L I Y  +G GL +  Y D+   A  + RR VSG
Sbjct:  907 IDEAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQ-RGSGLGLAMYVDASY-ADTEDRRSVSG 1140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE1.630e-3535.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.700e-3535.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.720e-3535.71Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE3.160e-3535.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.080e-3435.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE5.350e-3434.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL99_9PHAE2.940e-3334.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE6.460e-3234.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE1.100e-3133.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE2.210e-3136.29Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18660contigH-elongata_contig18660:1357..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size795
Cds size795
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930068.0003192-CDS-H-elongata_contig18660:1356..21511622930068.0003192-CDS-H-elongata_contig18660:1356..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18660 1357..2151 +
1691679268.5035014-CDS-H-elongata_contig18660:1356..21511691679268.5035014-CDS-H-elongata_contig18660:1356..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18660 1357..2151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18660.5083.1prot_H-elongata_contig18660.5083.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18660 1357..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18660.5083.1

>prot_H-elongata_contig18660.5083.1 ID=prot_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRN
FCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMD
RFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETF
DVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCV
QVPQTLGPVHTEAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGA
CLDTRRYVSGAMLML
back to top

mRNA from alignment at H-elongata_contig18660:1357..2151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18660.5083.1 ID=mRNA_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig18660:1357..2151+ (Himanthalia elongata Himel1 dioecious)
GACGCGGAACAGACATTCTTAAAGGCGGATATCCATGAGGAATTATACAT TGAGATCTCCAAGGAGTATGAGAAGTTTCCGGGGGCAGTGGAACGGCTGA ACAAGACCATTTACGGACTCGTACAGTCGGGGAGGTGGTGGAACAGAAAT TTCTGCAACAGCATGACAGCGATTGGATTCGATCAGGCAAAGGCGGATCC GTGCGTGTTTCGTAAGGCTGTTGACGACGAGGCAGAAGTGATTGTGGTCG TACACGTAGACGACATTCTTGTCCATGCCAAAGACCAAGCGATGATGGAT AGATTCGCAGCTAAGCTAGGACTAAAGTTCAAATTGAAGGACATGGACGA CGCCAGGTACTACATGGGATGTCAGATCACTAGGAAAAGCAAGGCGCGCG AGTTGAATATCGATCAACCCTTGTACGTGGATTCAATGGTGGAAACGTTC GACGTCAAGAAGACAAGCAAGATACCGGCTACGTTGGGGGTGCCAACACT CTCAAATGAGGAAGTTTCCATACTAGGAGACAGTGGGGACGCTTATGTGG ACGGCGACGATGGAACGGTCGGGCATTGCGAGCGCAGTACACACTGTGTC CAGGTTCCGCAAACCCTTGGACCAGTGCATACGGAGGCAGTGATGAAGAT CATGCAGTATCTCCTTCACACGAAGGAATTAGAGATTACGTACGGTGGAA AGGGCGGTGGACTCTGCATCGAGGCATACACGGACTCAGATATCGGGGCC TGTCTGGATACAAGGCGATATGTGTCGGGTGCGATGTTGATGCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18660:1357..2151+

>mRNA_H-elongata_contig18660.5083.1 ID=mRNA_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig18660:1357..2151+ (Himanthalia elongata Himel1 dioecious)
GACGCGGAACAGACATTCTTAAAGGCGGATATCCATGAGGAATTATACAT
TGAGATCTCCAAGGAGTATGAGAAGTTTCCGGGGGCAGTGGAACGGCTGA
ACAAGACCATTTACGGACTCGTACAGTCGGGGAGGTGGTGGAACAGAAAT
TTCTGCAACAGCATGACAGCGATTGGATTCGATCAGGCAAAGGCGGATCC
GTGCGTGTTTCGTAAGGCTGTTGACGACGAGGCAGAAGTGATTGTGGTCG
TACACGTAGACGACATTCTTGTCCATGCCAAAGACCAAGCGATGATGGAT
AGATTCGCAGCTAAGCTAGGACTAAAGTTCAAATTGAAGGACATGGACGA
CGCCAGGTACTACATGGGATGTCAGATCACTAGGAAAAGCAAGGCGCGCG
AGTTGAATATCGATCAACCCTTGTACGTGGATTCAATGGTGGAAACGTTC
GACGTCAAGAAGACAAGCAAGATACCGGCTACGTTGGGGGTGCCAACACT
CTCAAATGAGGAAGTTTCCATACTAGGAGACAGTGGGGACGCTTATGTGG
ACGGCGACGATGGAACGGTCGGGCATTGCGAGCGCAGTACACACTGTGTC
CAGGTTCCGCAAACCCTTGGACCAGTGCATACGGAGGCAGTGATGAAGAT
CATGCAGTATCTCCTTCACACGAAGGAATTAGAGATTACGTACGGTGGAA
AGGGCGGTGGACTCTGCATCGAGGCATACACGGACTCAGATATCGGGGCC
TGTCTGGATACAAGGCGATATGTGTCGGGTGCGATGTTGATGCTGGACGC
GGAACAGACATTCTTAAAGGCGGATATCCATGAGGAATTATACATTGAGA
TCTCCAAGGAGTATGAGAAGTTTCCGGGGGCAGTGGAACGGCTGAACAAG
ACCATTTACGGACTCGTACAGTCGGGGAGGTGGTGGAACAGAAATTTCTG
CAACAGCATGACAGCGATTGGATTCGATCAGGCAAAGGCGGATCCGTGCG
TGTTTCGTAAGGCTGTTGACGACGAGGCAGAAGTGATTGTGGTCGTACAC
GTAGACGACATTCTTGTCCATGCCAAAGACCAAGCGATGATGGATAGATT
CGCAGCTAAGCTAGGACTAAAGTTCAAATTGAAGGACATGGACGACGCCA
GGTACTACATGGGATGTCAGATCACTAGGAAAAGCAAGGCGCGCGAGTTG
AATATCGATCAACCCTTGTACGTGGATTCAATGGTGGAAACGTTCGACGT
CAAGAAGACAAGCAAGATACCGGCTACGTTGGGGGTGCCAACACTCTCAA
ATGAGGAAGTTTCCATACTAGGAGACAGTGGGGACGCTTATGTGGACGGC
GACGATGGAACGGTCGGGCATTGCGAGCGCAGTACACACTGTGTCCAGGT
TCCGCAAACCCTTGGACCAGTGCATACGGAGGCAGTGATGAAGATCATGC
AGTATCTCCTTCACACGAAGGAATTAGAGATTACGTACGGTGGAAAGGGC
GGTGGACTCTGCATCGAGGCATACACGGACTCAGATATCGGGGCCTGTCT
GGATACAAGGCGATATGTGTCGGGTGCGATGTTGATGCTG
back to top