mRNA_H-elongata_contig18660.5083.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.630e-35 Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + +++ GC I R +A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 849 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1111
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.700e-35 Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + +++ GC I R +A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 1228 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1490
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.720e-35 Identity = 95/266 (35.71%), Postives = 137/266 (51.50%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + +++ GC I R +A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 1391 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1653
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.160e-35 Identity = 95/266 (35.71%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD +I+V++VDDILV D+ + A L KF K++ + +++ GC I R +A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 1248 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1510
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 3.080e-34 Identity = 94/265 (35.47%), Postives = 135/265 (50.94%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVS 777
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + +++ GC I R A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VS
Sbjct: 440 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARY-ADTEDRRSVS 701
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.350e-34 Identity = 91/266 (34.21%), Postives = 138/266 (51.88%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++++ +++ GC I R + L I Q Y+DSMV+ FDV+ TS+IPA+ GV + G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 403 DVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 665
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5KL99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL99_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.940e-33 Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQV------PQTLGPVHTEAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
D +Q + A + EE+++++ + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + + GC I R +A L I Q Y+DSMV+ FDV+ TS+IPA+ GV + G+ G V R V H +A+ KI+ YL T++L ITY +G GL + Y D+ A + RR VSG
Sbjct: 831 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECHWCDGCAIERDVEAGTLKISQTAYIDSMVKPFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAKGSMTWVSTFSRPDVSFAVRAIARHAHATAKRHWDAIQKILGYLKGTRDLGITYK-RGSGLGLAVYVDASH-ADSEDRRSVSG 1093
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 134 bits (337), Expect = 6.460e-32 Identity = 90/261 (34.48%), Postives = 130/261 (49.81%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCER------STHCVQVPQTLGPVHTEAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTR 765
D +Q A + EE++ + + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF K++ + +++ GC I R +A L I Q Y+DSMVE FDVK TS+IPAT G E G+ G V R + + H +A+ KI+ YL T++L ITY +G GL Y D+ D+R
Sbjct: 958 DVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGPSVYVDASYADTEDSR 1216
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.100e-31 Identity = 85/254 (33.46%), Postives = 132/254 (51.97%), Query Frame = 1
Query: 1 DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYG-GKGGGLCIEAYTDSD 741
D +Q + A + EE++++ + + + + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ +I+V++VDDILV D+ + A L KF +++ + ++ GC I R +A L I Q Y+DSMV+ FDV+ TS+IPA+ GV + G+ G V R V H +A+ KI+ YL T++L ITY G G GL + + T+++
Sbjct: 579 DVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLSITYQRGSGLGLAVASSTEAE 831
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.210e-31 Identity = 86/237 (36.29%), Postives = 122/237 (51.48%), Query Frame = 1
Query: 88 VERLNKTIYGLVQSGRWWNRNFCNSMTAIGFDQAKADPCVFRKAVDDEAEVIVVVHVDDILVHAKDQAMMDRFAAKLGLKFKLKDMDDARYYMGCQITRKSKARELNIDQPLYVDSMVETFDVKKTSKIPATLGVPTLSNEEVSILGDSGDAYVDGDDGTVGHCERSTHCVQVPQTLGPVHT------EAVMKIMQYLLHTKELEITYGGKGGGLCIEAYTDSDIGACLDTRRYVSG 780
++ + IYGL QSGR W + +++ GF+Q KADPCVFRK VD+ A +I+V++VDDILV D+ + A L KF K++ + +++ GC I R K L I Q Y+ SMV+ FDV+ TS+IPAT GV + E G+ G V V H +A+ K + YL T++L I Y +G GL + Y D+ A + RR VSG
Sbjct: 907 IDEAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQ-RGSGLGLAMYVDASY-ADTEDRRSVSG 1140 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18660.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18660.5083.1 >prot_H-elongata_contig18660.5083.1 ID=prot_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp DAEQTFLKADIHEELYIEISKEYEKFPGAVERLNKTIYGLVQSGRWWNRNback to top mRNA from alignment at H-elongata_contig18660:1357..2151+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18660.5083.1 ID=mRNA_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig18660:1357..2151+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18660:1357..2151+ >mRNA_H-elongata_contig18660.5083.1 ID=mRNA_H-elongata_contig18660.5083.1|Name=mRNA_H-elongata_contig18660.5083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig18660:1357..2151+ (Himanthalia elongata Himel1 dioecious)back to top |