mRNA_H-elongata_contig186506.5079.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: D7G4M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M9_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.240e-25 Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1
Query: 10 GGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
GGG N+SGEAPFEIRGFSLAN A L G+ IT ASF+EYF++GG+ GLSG+GFVYGIPIALIGLALK
Sbjct: 84 GGGINVSGEAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALK 149
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A835YHW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW7_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.840e-22 Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
GG N+SGEAPFEIRGFSL N L+ GV IT ASF EYFTSGG AGLSG+GFVYGIP+ALIGLALK
Sbjct: 77 GGINVSGEAPFEIRGFSLGNAFLIGGVVITTASFAEYFTSGG-AGLSGLGFVYGIPVALIGLALK 140
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S2V4E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 6.270e-21 Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 1 SMIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
++ GG NLSGE PFEIRGFSL + L +GV +T SF E+F S GS GLSG+GFVYGIPIAL+GL+LK
Sbjct: 4 TITSGGINLSGEPPFEIRGFSLGDAFLGVGVAVTAISFTEFFMSAGSEGLSGIGFVYGIPIALVGLSLK 72
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S1XTC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTC2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
GG N SGE PFEIRGFSLA L+ G +T ASF EYF GG AGL G+GFVYGIP+ LIGL+LK
Sbjct: 59 GGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLK 123
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S1U5M2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5M2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.490e-18 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
GG N SGE PFEIRGFSLA L+ G +T ASF EYF GG AGL G+GFVYGIP+ LIGL+LK
Sbjct: 59 GGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLK 123
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S3K6V7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6V7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.060e-17 Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 1 SMIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
++ GGFN +GE P EIRGFSLA L G +TGASF EYF S G AGLS +GF+YGIPI LIG AL+
Sbjct: 80 TVTAGGFNTAGEPPLEIRGFSLAKAFLAGGTLLTGASFAEYFGSQGGAGLSSLGFIYGIPILLIGFALQ 148
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7R9UF83_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF83_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 6.870e-17 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
GG N SG+ PFEIRGFSLA L L G +T SF EYF+ GG +G+SG+GFVYGIP+ LIGL+LK
Sbjct: 55 GGINTSGKPPFEIRGFSLATLFLGGGFLLTVGSFAEYFSEGGGSGVSGLGFVYGIPVLLIGLSLK 119
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A5J4YMU9_PORPP (Thylakoid membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMU9_PORPP) HSP 1 Score: 80.1 bits (196), Expect = 1.440e-16 Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 34 EAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
E PFEIRGFSLAN +G+ +TG SFF YFTS G+A S +GFVYG+PI LIGLALK
Sbjct: 67 EVPFEIRGFSLANFGTALGIVVTGYSFFSYFTSSGTASGSSLGFVYGVPILLIGLALK 124
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7R9ZUA7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZUA7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.620e-16 Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 1 SMIGG-GFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGL--SGVGFVYGIPIALIGLALK 207
+M+GG G N +GE PFEIRGFSL N +L G+ IT SF EY + GS GL SG+GFVYGIP+AL G ALK
Sbjct: 62 AMVGGAGVNNAGEPPFEIRGFSLGNFVILSGIAITVLSFAEYLSDSGSDGLNVSGLGFVYGIPVALAGAALK 133
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S0UIW3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIW3_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 5.060e-16 Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 1 SMIGG-GFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGL--SGVGFVYGIPIALIGLALK 207
+M+GG G N +GE PFEIRGFSL N +L G+ IT SF EY + GS GL SG+GFVYGIP+AL G ALK
Sbjct: 62 AMVGGAGVNNAGEPPFEIRGFSLGNFVILSGIAITILSFAEYLSDSGSDGLNVSGLGFVYGIPVALAGAALK 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig186506.5079.1 >prot_H-elongata_contig186506.5079.1 ID=prot_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp MIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSback to top mRNA from alignment at H-elongata_contig186506:125..340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig186506.5079.1 ID=mRNA_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig186506:125..340+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig186506:125..340+ >mRNA_H-elongata_contig186506.5079.1 ID=mRNA_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig186506:125..340+ (Himanthalia elongata Himel1 dioecious)back to top |