mRNA_H-elongata_contig186506.5079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186506.5079.1
Unique NamemRNA_H-elongata_contig186506.5079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: D7G4M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.240e-25
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   10 GGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            GGG N+SGEAPFEIRGFSLAN A L G+ IT ASF+EYF++GG+ GLSG+GFVYGIPIALIGLALK
Sbjct:   84 GGGINVSGEAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALK 149          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A835YHW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.840e-22
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            GG N+SGEAPFEIRGFSL N  L+ GV IT ASF EYFTSGG AGLSG+GFVYGIP+ALIGLALK
Sbjct:   77 GGINVSGEAPFEIRGFSLGNAFLIGGVVITTASFAEYFTSGG-AGLSGLGFVYGIPVALIGLALK 140          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S2V4E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.270e-21
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 SMIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            ++  GG NLSGE PFEIRGFSL +  L +GV +T  SF E+F S GS GLSG+GFVYGIPIAL+GL+LK
Sbjct:    4 TITSGGINLSGEPPFEIRGFSLGDAFLGVGVAVTAISFTEFFMSAGSEGLSGIGFVYGIPIALVGLSLK 72          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S1XTC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTC2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            GG N SGE PFEIRGFSLA   L+ G  +T ASF EYF  GG AGL G+GFVYGIP+ LIGL+LK
Sbjct:   59 GGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLK 123          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S1U5M2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5M2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.490e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            GG N SGE PFEIRGFSLA   L+ G  +T ASF EYF  GG AGL G+GFVYGIP+ LIGL+LK
Sbjct:   59 GGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLK 123          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S3K6V7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6V7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.060e-17
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 SMIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            ++  GGFN +GE P EIRGFSLA   L  G  +TGASF EYF S G AGLS +GF+YGIPI LIG AL+
Sbjct:   80 TVTAGGFNTAGEPPLEIRGFSLAKAFLAGGTLLTGASFAEYFGSQGGAGLSSLGFIYGIPILLIGFALQ 148          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7R9UF83_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF83_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.870e-17
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   13 GGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            GG N SG+ PFEIRGFSLA L L  G  +T  SF EYF+ GG +G+SG+GFVYGIP+ LIGL+LK
Sbjct:   55 GGINTSGKPPFEIRGFSLATLFLGGGFLLTVGSFAEYFSEGGGSGVSGLGFVYGIPVLLIGLSLK 119          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A5J4YMU9_PORPP (Thylakoid membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMU9_PORPP)

HSP 1 Score: 80.1 bits (196), Expect = 1.440e-16
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   34 EAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLSGVGFVYGIPIALIGLALK 207
            E PFEIRGFSLAN    +G+ +TG SFF YFTS G+A  S +GFVYG+PI LIGLALK
Sbjct:   67 EVPFEIRGFSLANFGTALGIVVTGYSFFSYFTSSGTASGSSLGFVYGVPILLIGLALK 124          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7R9ZUA7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZUA7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.620e-16
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 SMIGG-GFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGL--SGVGFVYGIPIALIGLALK 207
            +M+GG G N +GE PFEIRGFSL N  +L G+ IT  SF EY +  GS GL  SG+GFVYGIP+AL G ALK
Sbjct:   62 AMVGGAGVNNAGEPPFEIRGFSLGNFVILSGIAITVLSFAEYLSDSGSDGLNVSGLGFVYGIPVALAGAALK 133          
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Match: A0A7S0UIW3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIW3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.060e-16
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 SMIGG-GFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGL--SGVGFVYGIPIALIGLALK 207
            +M+GG G N +GE PFEIRGFSL N  +L G+ IT  SF EY +  GS GL  SG+GFVYGIP+AL G ALK
Sbjct:   62 AMVGGAGVNNAGEPPFEIRGFSLGNFVILSGIAITILSFAEYLSDSGSDGLNVSGLGFVYGIPVALAGAALK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186506.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M9_ECTSI1.240e-2578.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHW7_9STRA3.840e-2280.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4E2_9STRA6.270e-2165.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1XTC2_9STRA1.350e-1867.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1U5M2_9STRA2.490e-1867.69Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3K6V7_9STRA5.060e-1762.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9UF83_9STRA6.870e-1764.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A5J4YMU9_PORPP1.440e-1667.24Thylakoid membrane protein n=1 Tax=Porphyridium pu... [more]
A0A7R9ZUA7_9STRA3.620e-1661.11Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S0UIW3_9STRA5.060e-1661.11Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186506contigH-elongata_contig186506:125..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3e-20
Seed eggNOG ortholog2880.D7G4M9
EggNOG free text desc.Protein of unknown function (DUF2854)
EggNOG OGs28IHE@1,2QQU9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size213
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.6939368-UTR-H-elongata_contig186506:124..1271622930067.6939368-UTR-H-elongata_contig186506:124..127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186506 125..127 +
1691679268.4351132-UTR-H-elongata_contig186506:124..1271691679268.4351132-UTR-H-elongata_contig186506:124..127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186506 125..127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.7136931-CDS-H-elongata_contig186506:127..3401622930067.7136931-CDS-H-elongata_contig186506:127..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186506 128..340 +
1691679268.4455147-CDS-H-elongata_contig186506:127..3401691679268.4455147-CDS-H-elongata_contig186506:127..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186506 128..340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186506.5079.1prot_H-elongata_contig186506.5079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186506 128..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186506.5079.1

>prot_H-elongata_contig186506.5079.1 ID=prot_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MIGGGFNLSGEAPFEIRGFSLANLALLIGVGITGASFFEYFTSGGSAGLS
GVGFVYGIPIALIGLALKVL*
back to top

mRNA from alignment at H-elongata_contig186506:125..340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186506.5079.1 ID=mRNA_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig186506:125..340+ (Himanthalia elongata Himel1 dioecious)
AGCATGATCGGCGGAGGCTTCAACCTGTCGGGAGAGGCTCCCTTCGAGAT TCGCGGATTCTCGCTCGCAAATCTAGCTCTCTTGATCGGGGTCGGCATCA CGGGAGCCTCGTTCTTCGAGTACTTCACGTCTGGAGGGTCGGCCGGGCTT TCTGGCGTTGGATTCGTGTATGGCATTCCCATCGCCCTCATCGGGCTTGC GCTCAAGGTGTTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig186506:125..340+

>mRNA_H-elongata_contig186506.5079.1 ID=mRNA_H-elongata_contig186506.5079.1|Name=mRNA_H-elongata_contig186506.5079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig186506:125..340+ (Himanthalia elongata Himel1 dioecious)
ATGATCGGCGGAGGCTTCAACCTGTCGGGAGAGGCTCCCTTCGAGATTCG
CGGATTCTCGCTCGCAAATCTAGCTCTCTTGATCGGGGTCGGCATCACGG
GAGCCTCGTTCTTCGAGTACTTCACGTCTGGAGGGTCGGCCGGGCTTTCT
GGCGTTGGATTCGTGTATGGCATTCCCATCGCCCTCATCGGGCTTGCGCT
CAAGGTGTTGTGAATGATCGGCGGAGGCTTCAACCTGTCGGGAGAGGCTC
CCTTCGAGATTCGCGGATTCTCGCTCGCAAATCTAGCTCTCTTGATCGGG
GTCGGCATCACGGGAGCCTCGTTCTTCGAGTACTTCACGTCTGGAGGGTC
GGCCGGGCTTTCTGGCGTTGGATTCGTGTATGGCATTCCCATCGCCCTCA
TCGGGCTTGCGCTCAAGGTGTTGTGA
back to top