mRNA_H-elongata_contig18565.5026.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI) HSP 1 Score: 149 bits (375), Expect = 2.700e-40 Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query: 1 KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
+AS+ +LKDDPGTPEECNLFVGDLARNLTEEKLEKAF+QHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ
Sbjct: 189 EASTNSLKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 267
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE) HSP 1 Score: 149 bits (375), Expect = 4.790e-40 Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query: 1 KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
+AS+ +LKDDPGTPEECNLFVGDLARNLTEEKLEKAF+QHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ
Sbjct: 52 EASTNSLKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 130
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A835ZEG8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.020e-22 Identity = 45/79 (56.96%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 1 KASSATLKDD-PGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
K+++A +D+ P + EE NLFVGDLAR L+E++L+ AF Q GRV++V+IKRD+ TGKNLGYGFV++ H+EA AK++M
Sbjct: 6 KSAAALNRDNKPVSQEESNLFVGDLARGLSEKELQAAFAQFGRVVTVNIKRDKNTGKNLGYGFVRMGMHEEAVIAKDSM 84
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 8.430e-18 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 31 PGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
P ++ NLFVGDLAR++TEE+L+ AF+ HGRV+ V +KRDR T +NLGYGFV++ SH EA AKE+M
Sbjct: 47 PTPGDDNNLFVGDLARDITEEELKDAFEPHGRVVEVLVKRDRLTHRNLGYGFVRMGSHAEACLAKESM 114
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.130e-15 Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 16 TLKDDPGT----PE-----ECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
TL+++ GT PE +C LF+GDLAR LTE ++ +AF G V V IKRD+ T +NLGYGFV++SSH++A AKE MQ
Sbjct: 85 TLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQ 167
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7R9U4X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.190e-12 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 49 CNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
C+LFVGDL R+ TEE L+KAF +G+++ +KRD+ +G+NLGYGF+KL + A+ A M
Sbjct: 49 CHLFVGDLHRSTTEEDLQKAFSPYGKIVFAEVKRDKVSGRNLGYGFLKLDTEDGAQRALREM 110
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7C4SR27_9PROT (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4SR27_9PROT) HSP 1 Score: 65.1 bits (157), Expect = 5.970e-12 Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 52 NLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
N++VG+L+ LTE+ L +AF+Q GRV SVSI +DR TG++ G+GFV++ + EA+AA E +
Sbjct: 2 NIYVGNLSYELTEDDLRQAFEQFGRVSSVSILKDRYTGQSRGFGFVEMPAKAEAQAAIEGL 62
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A1F2QLV7_9BACT (RNA-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium RBG_16_64_8 TaxID=1797172 RepID=A0A1F2QLV7_9BACT) HSP 1 Score: 63.9 bits (154), Expect = 1.260e-11 Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 55 LFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
L+VG+L+ + T+E LEKAF +HG V+SV++ DR TG+ G+GFV++S+ +E AAK A+
Sbjct: 6 LYVGNLSYSTTKETLEKAFGEHGEVVSVNLITDRQTGRPKGFGFVEMSTPEEGEAAKAAL 65
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7S1TRI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.930e-11 Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 49 CNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
C+LFVGDL R TEE L++AF+ +G ++ +KRD+ +G+NLGYGF+KL + + A A M
Sbjct: 76 CHLFVGDLHRTTTEEDLQEAFRPYGNIVFSEVKRDKVSGRNLGYGFLKLDTEEGAERALREM 137
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7J5EB83_9BACT (RNA-binding protein (Fragment) n=1 Tax=Melioribacteraceae bacterium TaxID=2614255 RepID=A0A7J5EB83_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 2.380e-11 Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 55 LFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAA 222
++VG+L+ +TE+ L+ AF+Q+G V SV+I DRATGK+ G+GFV++SS EA+AA
Sbjct: 3 IYVGNLSYEVTEDDLKVAFEQYGSVDSVAIIMDRATGKSKGFGFVEMSSKDEAQAA 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18565.5026.1 >prot_H-elongata_contig18565.5026.1 ID=prot_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRback to top mRNA from alignment at H-elongata_contig18565:5903..6695+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18565.5026.1 ID=mRNA_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig18565:5903..6695+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18565:5903..6695+ >mRNA_H-elongata_contig18565.5026.1 ID=mRNA_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig18565:5903..6695+ (Himanthalia elongata Himel1 dioecious)back to top |