mRNA_H-elongata_contig18565.5026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18565.5026.1
Unique NamemRNA_H-elongata_contig18565.5026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.700e-40
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
            +AS+ +LKDDPGTPEECNLFVGDLARNLTEEKLEKAF+QHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ
Sbjct:  189 EASTNSLKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 267          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.790e-40
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
            +AS+ +LKDDPGTPEECNLFVGDLARNLTEEKLEKAF+QHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ
Sbjct:   52 EASTNSLKDDPGTPEECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 130          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A835ZEG8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.020e-22
Identity = 45/79 (56.96%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 KASSATLKDD-PGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            K+++A  +D+ P + EE NLFVGDLAR L+E++L+ AF Q GRV++V+IKRD+ TGKNLGYGFV++  H+EA  AK++M
Sbjct:    6 KSAAALNRDNKPVSQEESNLFVGDLARGLSEKELQAAFAQFGRVVTVNIKRDKNTGKNLGYGFVRMGMHEEAVIAKDSM 84          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.430e-18
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   31 PGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            P   ++ NLFVGDLAR++TEE+L+ AF+ HGRV+ V +KRDR T +NLGYGFV++ SH EA  AKE+M
Sbjct:   47 PTPGDDNNLFVGDLARDITEEELKDAFEPHGRVVEVLVKRDRLTHRNLGYGFVRMGSHAEACLAKESM 114          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.130e-15
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   16 TLKDDPGT----PE-----ECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQ 237
            TL+++ GT    PE     +C LF+GDLAR LTE ++ +AF   G V  V IKRD+ T +NLGYGFV++SSH++A  AKE MQ
Sbjct:   85 TLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQ 167          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7R9U4X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.190e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   49 CNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            C+LFVGDL R+ TEE L+KAF  +G+++   +KRD+ +G+NLGYGF+KL +   A+ A   M
Sbjct:   49 CHLFVGDLHRSTTEEDLQKAFSPYGKIVFAEVKRDKVSGRNLGYGFLKLDTEDGAQRALREM 110          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7C4SR27_9PROT (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4SR27_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 5.970e-12
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   52 NLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            N++VG+L+  LTE+ L +AF+Q GRV SVSI +DR TG++ G+GFV++ +  EA+AA E +
Sbjct:    2 NIYVGNLSYELTEDDLRQAFEQFGRVSSVSILKDRYTGQSRGFGFVEMPAKAEAQAAIEGL 62          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A1F2QLV7_9BACT (RNA-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium RBG_16_64_8 TaxID=1797172 RepID=A0A1F2QLV7_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-11
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   55 LFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            L+VG+L+ + T+E LEKAF +HG V+SV++  DR TG+  G+GFV++S+ +E  AAK A+
Sbjct:    6 LYVGNLSYSTTKETLEKAFGEHGEVVSVNLITDRQTGRPKGFGFVEMSTPEEGEAAKAAL 65          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7S1TRI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.930e-11
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   49 CNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAM 234
            C+LFVGDL R  TEE L++AF+ +G ++   +KRD+ +G+NLGYGF+KL + + A  A   M
Sbjct:   76 CHLFVGDLHRTTTEEDLQEAFRPYGNIVFSEVKRDKVSGRNLGYGFLKLDTEEGAERALREM 137          
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Match: A0A7J5EB83_9BACT (RNA-binding protein (Fragment) n=1 Tax=Melioribacteraceae bacterium TaxID=2614255 RepID=A0A7J5EB83_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.380e-11
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   55 LFVGDLARNLTEEKLEKAFQQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAA 222
            ++VG+L+  +TE+ L+ AF+Q+G V SV+I  DRATGK+ G+GFV++SS  EA+AA
Sbjct:    3 IYVGNLSYEVTEDDLKVAFEQYGSVDSVAIIMDRATGKSKGFGFVEMSSKDEAQAA 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18565.5026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP3_ECTSI2.700e-4093.67Poly(A) binding protein, cytoplasmic 4-like n=1 Ta... [more]
A0A6H5L4J2_9PHAE4.790e-4093.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEG8_9STRA9.020e-2256.96RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RB19_9STRA8.430e-1860.29Hypothetical protein n=4 Tax=Rhizochromulina marin... [more]
W7TSQ6_9STRA3.130e-1551.81Tia1 cytotoxic granule-associated rna binding prot... [more]
A0A7R9U4X6_9STRA2.190e-1250.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7C4SR27_9PROT5.970e-1250.82RNA-binding protein n=1 Tax=Proteobacteria bacteri... [more]
A0A1F2QLV7_9BACT1.260e-1150.00RNA-binding protein (Fragment) n=1 Tax=Acidobacter... [more]
A0A7S1TRI4_9STRA1.930e-1148.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7J5EB83_9BACT2.380e-1153.57RNA-binding protein (Fragment) n=1 Tax=Melioribact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18565contigH-elongata_contig18565:5903..6695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D7FNP3
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
EC4.3.1.17,4.3.1.19
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.5456452-CDS-H-elongata_contig18565:5902..60281622930061.5456452-CDS-H-elongata_contig18565:5902..6028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18565 5903..6028 +
1691679265.989616-CDS-H-elongata_contig18565:5902..60281691679265.989616-CDS-H-elongata_contig18565:5902..6028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18565 5903..6028 +
1622930061.5673673-CDS-H-elongata_contig18565:6584..66951622930061.5673673-CDS-H-elongata_contig18565:6584..6695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18565 6585..6695 +
1691679266.0006154-CDS-H-elongata_contig18565:6584..66951691679266.0006154-CDS-H-elongata_contig18565:6584..6695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18565 6585..6695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18565.5026.1prot_H-elongata_contig18565.5026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18565 5903..6695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18565.5026.1

>prot_H-elongata_contig18565.5026.1 ID=prot_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
KASSATLKDDPGTPEECNLFVGDLARNLTEEKLEKAFQQHGRVMSVSIKR
DRATGKNLGYGFVKLSSHQEARAAKEAMQ
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mRNA from alignment at H-elongata_contig18565:5903..6695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18565.5026.1 ID=mRNA_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig18565:5903..6695+ (Himanthalia elongata Himel1 dioecious)
AAGGCATCGAGCGCGACCCTCAAGGACGACCCGGGAACACCTGAAGAGTG CAACCTTTTCGTCGGCGACCTGGCGCGGAATCTAACGGAGGAAAAGCTGG AGAAAGCGTTCCAGCAGCACGGACGGGTGCGTAATACTTTCTCTCGTCGA TCTTGATTTCGACCTTGATCTCGATCTGCCTCCCGAGTAACCGAAAGGCC TTGGTCCACAATCACAATCCAAAGATAATACTACTAATAAAAATAAGAGC ACAGTCGTAGGAGCTTTTCCCCTGGAGGTCCACTCTCCCACCAAGGGTTG GACGGATCTTTGGTCATTTTCTAGGGCTTTGCGTTTTCGTCCCATCTTAG GGTGCGTAGGGCCTTTTCTCGACCGCAGGATTACGGTGCAATAGTATATA GTATATGTAGTCCATAGCCGCACACGCTTCCACGTGGAACTTAACCGCCT TACGGAGGTATTATACTCTGAATAGTATGTGTGCGCGTCGCCCAAGCGCT AACCACGTTTACCATTTCATCCCTCGAAATATATTTGTGTATCTATGTAC ATACATACATACATACATACATATATTTGTTTTATTTTTCGGCACGATTA CCCCACCACCGCAAGCACAACCGATGCTGATTTCATGCCTCATCATGCCT CGACCGTGTCCTGCGCTCCCCGGTATACCCAGGTGATGTCGGTGTCGATC AAGCGCGATCGAGCCACGGGAAAGAACTTGGGGTATGGCTTCGTCAAGCT TTCTTCCCATCAAGAGGCGCGAGCTGCCAAGGAGGCCATGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig18565:5903..6695+

>mRNA_H-elongata_contig18565.5026.1 ID=mRNA_H-elongata_contig18565.5026.1|Name=mRNA_H-elongata_contig18565.5026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig18565:5903..6695+ (Himanthalia elongata Himel1 dioecious)
AAGGCATCGAGCGCGACCCTCAAGGACGACCCGGGAACACCTGAAGAGTG
CAACCTTTTCGTCGGCGACCTGGCGCGGAATCTAACGGAGGAAAAGCTGG
AGAAAGCGTTCCAGCAGCACGGACGGAAGGCATCGAGCGCGACCCTCAAG
GACGACCCGGGAACACCTGAAGAGTGCAACCTTTTCGTCGGCGACCTGGC
GCGGAATCTAACGGAGGAAAAGCTGGAGAAAGCGTTCCAGCAGCACGGAC
GGGTGATGTCGGTGTCGATCAAGCGCGATCGAGCCACGGGAAAGAACTTG
GGGTATGGCTTCGTCAAGCTTTCTTCCCATCAAGAGGCGCGAGCTGCCAA
GGAGGCCATGCAGGTGATGTCGGTGTCGATCAAGCGCGATCGAGCCACGG
GAAAGAACTTGGGGTATGGCTTCGTCAAGCTTTCTTCCCATCAAGAGGCG
CGAGCTGCCAAGGAGGCCATGCAG
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