mRNA_H-elongata_contig18564.5025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18564.5025.1
Unique NamemRNA_H-elongata_contig18564.5025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 5.490e-75
Identity = 138/268 (51.49%), Postives = 168/268 (62.69%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKNY-------NKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRP-----KKGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTPTSRKPIPSAKVATKLVESGASETFLDNALIPGLEDEM 768
            ME+L NT MEPGQNPDDYFN KHLLR +V+KMGEK+SDR+ KD+ VTGFT EYK+V+MIM+RD   +V  +QTTM HM LDEQSR   K  IAGRG  M     T S    CF C E G I++N         + K KPAGATKWC  H TT +SDEECY QGA RP         AF+ C  C H SS S+ K+        S   K AID +  G++ DEGF++ ATT T  +   +A+  T LVE GA+ET  D+ LIP L+D +
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVT---TASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASST--KAAIDSSTDGDESDEGFMY-ATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 3.400e-72
Identity = 134/261 (51.34%), Postives = 168/261 (64.37%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIK------KNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPK----KGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTPTSRKPIPSAKVATKLV-ESGASETFLDNALIP 750
            MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE +SDR  KDI V GF+DEYKDV+++++RD T +V  + +TM+++FLDEQSR   K RIAGRG AM    AT +S+IIC +C E G I+      KN  K K KPAGATKWCS H TT+HSDEECY+QG  RP+        F  C+ CTHCSS S          D S +E   +DFT   + FD GF+F   +  S +   ++    +LV +S ASET  DN LIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAM----ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKK--------DDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 5.140e-71
Identity = 131/272 (48.16%), Postives = 179/272 (65.81%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESN----LKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S          +  T+  K EK  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  D+ LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.020e-70
Identity = 134/272 (49.26%), Postives = 181/272 (66.54%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S   Q     T+I K+    EK  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.290e-70
Identity = 133/272 (48.90%), Postives = 181/272 (66.54%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S   Q     T+I K+    E+  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.320e-70
Identity = 133/272 (48.90%), Postives = 180/272 (66.18%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S         T+I K+    EK  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  DN LIP   LE+E
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 422          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 2.570e-70
Identity = 133/272 (48.90%), Postives = 180/272 (66.18%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S         T+I K+    EK  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 6.150e-70
Identity = 132/272 (48.53%), Postives = 181/272 (66.54%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+FN+KH LR +++KMGE +SDR  KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R   K +IAGRG AM    AT +S  ICF C E G +++N        +   K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S   Q     T+I K+    E+  IDF+   + F  GF++ AT    + R    +A   + LV+SGASET  D+ LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.350e-69
Identity = 126/224 (56.25%), Postives = 152/224 (67.86%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRI------KKNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK----GNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIF 642
            MEEL+NTPMEP QNPDDYFNQKHLLR + +KMGE +SD +  D  VTGFT+EYKDV+MIMYRD   +V+++QTTM+HMFLDEQSRN  K  IAGRG AMTA   T S    CF+C E G I      K+   K K KPAGA KWCS+H TT HSDEEC++QGA+RPKK    G A + C  CTHC S SN  +      + S  +   IDF+  G   +EGF++
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTA---TTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAE-IDFSAEGES-EEGFMY 334          
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 8.080e-69
Identity = 129/262 (49.24%), Postives = 166/262 (63.36%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHM-FLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIK------KNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPK----KGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIF-TATTPTSRKPIPSAKVATKLVESGASETFLDNALIP 750
            MEEL N PM PG+NPDDYFNQKHL+R ++ KMGE +SDR  KDI V GF+DEY+DV+++++RD T +   +Q+T+++  + +EQSR   K RIAGRG AM    AT +S+IIC +C E G I+      KN  K K KPAGATKWC  H TT+HSDEECY+QG  RP+       AF  C+ CTHCSS  N           S +E    DFT   + FD GF+F T +  + R    S+  +  LV++GASET  DN LIP
Sbjct:   96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAM----ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKND--------SNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI5.490e-7551.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE3.400e-7251.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE5.140e-7148.16Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KHG5_9PHAE1.020e-7049.26Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L1Z9_9PHAE1.290e-7048.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE1.320e-7048.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE2.570e-7048.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3T5_9PHAE6.150e-7048.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE6.350e-6956.25CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXR7_9PHAE8.080e-6949.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18564contigH-elongata_contig18564:3178..3945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size768
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.4923184-CDS-H-elongata_contig18564:3177..39451622930061.4923184-CDS-H-elongata_contig18564:3177..3945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18564 3178..3945 +
1691679265.9798295-CDS-H-elongata_contig18564:3177..39451691679265.9798295-CDS-H-elongata_contig18564:3177..3945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18564 3178..3945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18564.5025.1prot_H-elongata_contig18564.5025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18564 3178..3945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18564.5025.1

>prot_H-elongata_contig18564.5025.1 ID=prot_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFT
DEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMT
AKPATDSSNIICFNCTEHGRIKKNYNKPKIKPAGATKWCSIHRTTTHSDE
ECYKQGASRPKKGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAID
FTGSGNDFDEGFIFTATTPTSRKPIPSAKVATKLVESGASETFLDNALIP
GLEDEM
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mRNA from alignment at H-elongata_contig18564:3178..3945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18564.5025.1 ID=mRNA_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig18564:3178..3945+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGCTCGTCAACACGCCAATGGAACCTGGACAGAACCCCGACGA CTACTTCAACCAGAAGCATCTTCTTCGTTTCAGAGTGAAGAAAATGGGAG AGAAGGTCTCCGACCGGTGGTTAAAGGACATCATCGTCACGGGTTTCACC GATGAGTACAAGGATGTGAGGATGATAATGTACCGCGACTCTACCCCCGA CGTTGAGCAGATCCAGACCACCATGCAGCACATGTTTCTCGACGAACAGT CACGCAATTGCATGAAAAAACGAATCGCTGGCCGAGGTATTGCCATGACT GCCAAGCCAGCAACGGATTCATCGAATATCATCTGCTTCAACTGCACGGA ACATGGACGCATCAAAAAGAACTACAACAAGCCTAAAATCAAGCCAGCAG GAGCAACGAAGTGGTGTTCAATTCACCGCACCACCACACACAGTGACGAG GAGTGCTACAAACAGGGAGCATCACGGCCGAAGAAAGGAAACGCCTTTGC GATGTGTACGAAATGCACACACTGCTCTTCTGAGAGCAACTTGAAGCAAT ATATGGATAGGAACACCGACATATCTAAGGACGAGAAGCCGGCCATCGAT TTTACTGGCAGTGGCAACGACTTCGACGAAGGGTTCATATTCACCGCTAC GACCCCCACCTCGAGAAAGCCCATTCCCAGCGCAAAGGTTGCTACTAAGC TTGTGGAAAGTGGTGCGTCTGAGACATTCCTTGACAACGCACTCATCCCT GGATTGGAGGACGAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig18564:3178..3945+

>mRNA_H-elongata_contig18564.5025.1 ID=mRNA_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig18564:3178..3945+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGCTCGTCAACACGCCAATGGAACCTGGACAGAACCCCGACGA
CTACTTCAACCAGAAGCATCTTCTTCGTTTCAGAGTGAAGAAAATGGGAG
AGAAGGTCTCCGACCGGTGGTTAAAGGACATCATCGTCACGGGTTTCACC
GATGAGTACAAGGATGTGAGGATGATAATGTACCGCGACTCTACCCCCGA
CGTTGAGCAGATCCAGACCACCATGCAGCACATGTTTCTCGACGAACAGT
CACGCAATTGCATGAAAAAACGAATCGCTGGCCGAGGTATTGCCATGACT
GCCAAGCCAGCAACGGATTCATCGAATATCATCTGCTTCAACTGCACGGA
ACATGGACGCATCAAAAAGAACTACAACAAGCCTAAAATCAAGCCAGCAG
GAGCAACGAAGTGGTGTTCAATTCACCGCACCACCACACACAGTGACGAG
GAGTGCTACAAACAGGGAGCATCACGGCCGAAGAAAGGAAACGCCTTTGC
GATGTGTACGAAATGCACACACTGCTCTTCTGAGAGCAACTTGAAGCAAT
ATATGGATAGGAACACCGACATATCTAAGGACGAGAAGCCGGCCATCGAT
TTTACTGGCAGTGGCAACGACTTCGACGAAGGGTTCATATTCACCGCTAC
GACCCCCACCTCGAGAAAGCCCATTCCCAGCGCAAAGGTTGCTACTAAGC
TTGTGGAAAGTGGTGCGTCTGAGACATTCCTTGACAACGCACTCATCCCT
GGATTGGAGGACGAAATGATGGAAGAGCTCGTCAACACGCCAATGGAACC
TGGACAGAACCCCGACGACTACTTCAACCAGAAGCATCTTCTTCGTTTCA
GAGTGAAGAAAATGGGAGAGAAGGTCTCCGACCGGTGGTTAAAGGACATC
ATCGTCACGGGTTTCACCGATGAGTACAAGGATGTGAGGATGATAATGTA
CCGCGACTCTACCCCCGACGTTGAGCAGATCCAGACCACCATGCAGCACA
TGTTTCTCGACGAACAGTCACGCAATTGCATGAAAAAACGAATCGCTGGC
CGAGGTATTGCCATGACTGCCAAGCCAGCAACGGATTCATCGAATATCAT
CTGCTTCAACTGCACGGAACATGGACGCATCAAAAAGAACTACAACAAGC
CTAAAATCAAGCCAGCAGGAGCAACGAAGTGGTGTTCAATTCACCGCACC
ACCACACACAGTGACGAGGAGTGCTACAAACAGGGAGCATCACGGCCGAA
GAAAGGAAACGCCTTTGCGATGTGTACGAAATGCACACACTGCTCTTCTG
AGAGCAACTTGAAGCAATATATGGATAGGAACACCGACATATCTAAGGAC
GAGAAGCCGGCCATCGATTTTACTGGCAGTGGCAACGACTTCGACGAAGG
GTTCATATTCACCGCTACGACCCCCACCTCGAGAAAGCCCATTCCCAGCG
CAAAGGTTGCTACTAAGCTTGTGGAAAGTGGTGCGTCTGAGACATTCCTT
GACAACGCACTCATCCCTGGATTGGAGGACGAAATG
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