mRNA_H-elongata_contig18564.5025.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 238 bits (607), Expect = 5.490e-75 Identity = 138/268 (51.49%), Postives = 168/268 (62.69%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKNY-------NKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRP-----KKGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTPTSRKPIPSAKVATKLVESGASETFLDNALIPGLEDEM 768
ME+L NT MEPGQNPDDYFN KHLLR +V+KMGEK+SDR+ KD+ VTGFT EYK+V+MIM+RD +V +QTTM HM LDEQSR K IAGRG M T S CF C E G I++N + K KPAGATKWC H TT +SDEECY QGA RP AF+ C C H SS S+ K+ S K AID + G++ DEGF++ ATT T + +A+ T LVE GA+ET D+ LIP L+D +
Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVT---TASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASST--KAAIDSSTDGDESDEGFMY-ATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 243 bits (619), Expect = 3.400e-72 Identity = 134/261 (51.34%), Postives = 168/261 (64.37%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIK------KNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPK----KGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTPTSRKPIPSAKVATKLV-ESGASETFLDNALIP 750
MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE +SDR KDI V GF+DEYKDV+++++RD T +V + +TM+++FLDEQSR K RIAGRG AM AT +S+IIC +C E G I+ KN K K KPAGATKWCS H TT+HSDEECY+QG RP+ F C+ CTHCSS S D S +E +DFT + FD GF+F + S + ++ +LV +S ASET DN LIP
Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAM----ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKK--------DDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 240 bits (613), Expect = 5.140e-71 Identity = 131/272 (48.16%), Postives = 179/272 (65.81%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESN----LKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S + T+ K EK IDF+ + F GF++ AT + R +A + LV+SGASET D+ LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 245 bits (626), Expect = 1.020e-70 Identity = 134/272 (49.26%), Postives = 181/272 (66.54%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S Q T+I K+ EK IDF+ + F GF++ AT + R +A + LV+SGASET DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.290e-70 Identity = 133/272 (48.90%), Postives = 181/272 (66.54%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S Q T+I K+ E+ IDF+ + F GF++ AT + R +A + LV+SGASET DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 243 bits (621), Expect = 1.320e-70 Identity = 133/272 (48.90%), Postives = 180/272 (66.18%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S T+I K+ EK IDF+ + F GF++ AT + R +A + LV+SGASET DN LIP LE+E
Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 422
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 244 bits (623), Expect = 2.570e-70 Identity = 133/272 (48.90%), Postives = 180/272 (66.18%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S T+I K+ EK IDF+ + F GF++ AT + R +A + LV+SGASET DN LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 242 bits (617), Expect = 6.150e-70 Identity = 132/272 (48.53%), Postives = 181/272 (66.54%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIKKN--------YNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK-GNAFAMCTKCTHCSSESNLKQYMDRNTDISKD----EKPAIDFTGSGNDFDEGFIFTATTP--TSRKPIPSAKVATKLVESGASETFLDNALIPG--LEDE 765
+++L T MEPG+NPDD+FN+KH LR +++KMGE +SDR KDI V GF+++YKD++M+++RD + DV+Q+Q TM+++FLDEQ R K +IAGRG AM AT +S ICF C E G +++N + K KPAGATKWCS+H TTTHSDEECY QGA RP++ G AF+ CT C HCS++S Q T+I K+ E+ IDF+ + F GF++ AT + R +A + LV+SGASET D+ LIP LE+E
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAM----ATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 236 bits (602), Expect = 6.350e-69 Identity = 126/224 (56.25%), Postives = 152/224 (67.86%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHMFLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRI------KKNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPKK----GNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIF 642
MEEL+NTPMEP QNPDDYFNQKHLLR + +KMGE +SD + D VTGFT+EYKDV+MIMYRD +V+++QTTM+HMFLDEQSRN K IAGRG AMTA T S CF+C E G I K+ K K KPAGA KWCS+H TT HSDEEC++QGA+RPKK G A + C CTHC S SN + + S + IDF+ G +EGF++
Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTA---TTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAE-IDFSAEGES-EEGFMY 334
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE) HSP 1 Score: 226 bits (575), Expect = 8.080e-69 Identity = 129/262 (49.24%), Postives = 166/262 (63.36%), Query Frame = 1
Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTDEYKDVRMIMYRDSTPDVEQIQTTMQHM-FLDEQSRNCMKKRIAGRGIAMTAKPATDSSNIICFNCTEHGRIK------KNYNKPKIKPAGATKWCSIHRTTTHSDEECYKQGASRPK----KGNAFAMCTKCTHCSSESNLKQYMDRNTDISKDEKPAIDFTGSGNDFDEGFIF-TATTPTSRKPIPSAKVATKLVESGASETFLDNALIP 750
MEEL N PM PG+NPDDYFNQKHL+R ++ KMGE +SDR KDI V GF+DEY+DV+++++RD T + +Q+T+++ + +EQSR K RIAGRG AM AT +S+IIC +C E G I+ KN K K KPAGATKWC H TT+HSDEECY+QG RP+ AF C+ CTHCSS N S +E DFT + FD GF+F T + + R S+ + LV++GASET DN LIP
Sbjct: 96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAM----ATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKND--------SNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18564.5025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18564.5025.1 >prot_H-elongata_contig18564.5025.1 ID=prot_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp MEELVNTPMEPGQNPDDYFNQKHLLRFRVKKMGEKVSDRWLKDIIVTGFTback to top mRNA from alignment at H-elongata_contig18564:3178..3945+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18564.5025.1 ID=mRNA_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig18564:3178..3945+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18564:3178..3945+ >mRNA_H-elongata_contig18564.5025.1 ID=mRNA_H-elongata_contig18564.5025.1|Name=mRNA_H-elongata_contig18564.5025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig18564:3178..3945+ (Himanthalia elongata Himel1 dioecious)back to top |