prot_H-elongata_contig9996.17308.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9996.17308.1
Unique Nameprot_H-elongata_contig9996.17308.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: G3G5A6_9PHAE (ATP-dependent Clp protease proteolytic subunit (Fragment) n=18 Tax=Fucaceae TaxID=3010 RepID=G3G5A6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.760e-27
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFLA 53
            MSEYTDQPVDKIEEDTDRDFFMTP EA++YGLIDEVIKTKTSGIA PQMPFLA
Sbjct:   81 MSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTKTSGIAFPQMPFLA 133          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: D7G5V8_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5V8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.430e-21
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            MSEYTDQP DKIEEDTDRDFFMTP EAMEYGLIDEVIKTKTS + LP MP L
Sbjct:  212 MSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLIDEVIKTKTSELPLPAMPSL 263          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A836C9E3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.860e-20
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            M++YTDQPV+KIEEDTDRDFFMTP+EA+EYGLIDEVI TKTS + LP MP L
Sbjct:  167 MADYTDQPVEKIEEDTDRDFFMTPYEALEYGLIDEVITTKTSHLPLPAMPSL 218          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S4T9Q9_9STRA (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9Q9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.110e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            M+EY DQPV+KI EDTDRDFFMTP+EA++YGLIDEVIKTKTS I LP+MP L
Sbjct:  223 MAEYCDQPVEKIAEDTDRDFFMTPYEALDYGLIDEVIKTKTSHIPLPKMPSL 274          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A1Z5K0G9_FISSO (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G9_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 4.780e-19
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            +++YTDQPV+KIEEDTDRDFFMTP+EA++YG+IDEVIKTKTS I +P MP L
Sbjct:  207 IADYTDQPVEKIEEDTDRDFFMTPYEALDYGIIDEVIKTKTSHIPVPAMPSL 258          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S2H3E4_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H3E4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.470e-19
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            M++Y DQPV+KI+EDTDRDFFMTP+EA++YG+IDEVIKTKTS I LP+MP L
Sbjct:  227 MADYCDQPVEKIQEDTDRDFFMTPYEALDYGIIDEVIKTKTSHIPLPRMPSL 278          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S2JVK3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVK3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.490e-19
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            M+EYTDQP+DKI +DTDRDFFMTP EA+EYGLIDEVIKTKTS I  P MP L
Sbjct:  205 MAEYTDQPIDKIADDTDRDFFMTPGEALEYGLIDEVIKTKTSHIPTPAMPNL 256          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: B8BRT2_THAPS (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BRT2_THAPS)

HSP 1 Score: 85.1 bits (209), Expect = 9.400e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            ++EY DQPV+KIEEDTDRDFFMTP+EA +YG+IDEVIKTKTS I LP MP L
Sbjct:  207 IAEYCDQPVEKIEEDTDRDFFMTPYEAQDYGIIDEVIKTKTSHIPLPAMPSL 258          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S4ALX1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALX1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-18
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 52
            M++Y DQPV+KI EDTDRDFFMTP+EA++YGLIDEVIKTKTS I LP MP L
Sbjct:  211 MADYCDQPVEKIAEDTDRDFFMTPYEALDYGLIDEVIKTKTSHIPLPAMPSL 262          
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S1FUN7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUN7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-18
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0
Query:    1 MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFLA 53
            M++YT QP+ KIE+DTDRDFFMTP+E++EYG+IDEVIKTKTS IALP MP L+
Sbjct:  280 MADYTGQPLGKIEDDTDRDFFMTPYESLEYGIIDEVIKTKTSHIALPAMPVLS 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G5A6_9PHAE6.760e-2792.45ATP-dependent Clp protease proteolytic subunit (Fr... [more]
D7G5V8_ECTSI4.430e-2186.54ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A836C9E3_9STRA5.860e-2078.85ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S4T9Q9_9STRA3.110e-1978.85ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A1Z5K0G9_FISSO4.780e-1975.00ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S2H3E4_9STRA6.470e-1975.00ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2JVK3_9STRA6.490e-1978.85ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8BRT2_THAPS9.400e-1976.92ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S4ALX1_9STRA1.400e-1876.92ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1FUN7_9STRA2.400e-1873.58ATP-dependent Clp protease proteolytic subunit n=2... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.226.10coord: 1..46
e-value: 2.6E-10
score: 42.2
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 2..39
e-value: 7.1E-13
score: 48.8
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 1..41
IPR029045ClpP/crotonase-like domain superfamilySUPERFAMILY52096ClpP/crotonasecoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9996contigH-elongata_contig9996:4974..5645 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9996.17308.1mRNA_H-elongata_contig9996.17308.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9996 4563..6385 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9996.17308.1 ID=prot_H-elongata_contig9996.17308.1|Name=mRNA_H-elongata_contig9996.17308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMP
FLA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom_sf