mRNA_H-elongata_contig9996.17308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9996.17308.1
Unique NamemRNA_H-elongata_contig9996.17308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: G3G5A6_9PHAE (ATP-dependent Clp protease proteolytic subunit (Fragment) n=18 Tax=Fucaceae TaxID=3010 RepID=G3G5A6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.190e-32
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFLA 570
            QAKEIL+TKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTP EA++YGLIDEVIKTKTSGIA PQMPFLA
Sbjct:   66 QAKEILYTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPQEALDYGLIDEVIKTKTSGIAFPQMPFLA 133
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: D7G5V8_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5V8_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.920e-26
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILFTKRLLN YMSEYTDQP DKIEEDTDRDFFMTP EAMEYGLIDEVIKTKTS + LP MP L
Sbjct:  197 QAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLIDEVIKTKTSELPLPAMPSL 263
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A836C9E3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.310e-24
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILF K LLNRYM++YTDQPV+KIEEDTDRDFFMTP+EA+EYGLIDEVI TKTS + LP MP L
Sbjct:  152 QAKEILFIKSLLNRYMADYTDQPVEKIEEDTDRDFFMTPYEALEYGLIDEVITTKTSHLPLPAMPSL 218
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A1Z5K0G9_FISSO (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G9_FISSO)

HSP 1 Score: 110 bits (275), Expect = 4.660e-24
Identity = 52/67 (77.61%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILFTK LLN+Y+++YTDQPV+KIEEDTDRDFFMTP+EA++YG+IDEVIKTKTS I +P MP L
Sbjct:  192 QAKEILFTKALLNKYIADYTDQPVEKIEEDTDRDFFMTPYEALDYGIIDEVIKTKTSHIPVPAMPSL 258
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S2H3E4_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H3E4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.660e-23
Identity = 50/67 (74.63%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILFTK +LN++M++Y DQPV+KI+EDTDRDFFMTP+EA++YG+IDEVIKTKTS I LP+MP L
Sbjct:  212 QAKEILFTKAVLNKFMADYCDQPVEKIQEDTDRDFFMTPYEALDYGIIDEVIKTKTSHIPLPRMPSL 278
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S4T9Q9_9STRA (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9Q9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.600e-22
Identity = 51/67 (76.12%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILF K +LN++M+EY DQPV+KI EDTDRDFFMTP+EA++YGLIDEVIKTKTS I LP+MP L
Sbjct:  208 QAKEILFIKEVLNKFMAEYCDQPVEKIAEDTDRDFFMTPYEALDYGLIDEVIKTKTSHIPLPKMPSL 274
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S2JVK3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVK3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.090e-22
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILF K  LN+YM+EYTDQP+DKI +DTDRDFFMTP EA+EYGLIDEVIKTKTS I  P MP L
Sbjct:  190 QAKEILFIKACLNKYMAEYTDQPIDKIADDTDRDFFMTPGEALEYGLIDEVIKTKTSHIPTPAMPNL 256
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BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: B8BRT2_THAPS (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BRT2_THAPS)

HSP 1 Score: 105 bits (263), Expect = 2.180e-22
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILF K  LN+Y++EY DQPV+KIEEDTDRDFFMTP+EA +YG+IDEVIKTKTS I LP MP L
Sbjct:  192 QAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDYGIIDEVIKTKTSHIPLPAMPSL 258
[Close]
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S4ALX1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALX1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.260e-22
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFL 567
            QAKEILFTK  LN++M++Y DQPV+KI EDTDRDFFMTP+EA++YGLIDEVIKTKTS I LP MP L
Sbjct:  196 QAKEILFTKASLNKFMADYCDQPVEKIAEDTDRDFFMTPYEALDYGLIDEVIKTKTSHIPLPAMPSL 262
[Close]
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Match: A0A7S1FUN7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUN7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.540e-22
Identity = 50/68 (73.53%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:  367 QAKEILFTKRLLNRYMSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMPFLA 570
            QAKEIL+TK LLN++M++YT QP+ KIE+DTDRDFFMTP+E++EYG+IDEVIKTKTS IALP MP L+
Sbjct:  265 QAKEILYTKALLNQFMADYTGQPLGKIEDDTDRDFFMTPYESLEYGIIDEVIKTKTSHIALPAMPVLS 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9996.17308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G5A6_9PHAE1.190e-3292.65ATP-dependent Clp protease proteolytic subunit (Fr... [more]
D7G5V8_ECTSI2.920e-2688.06ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A836C9E3_9STRA1.310e-2480.60ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1Z5K0G9_FISSO4.660e-2477.61ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S2H3E4_9STRA6.660e-2374.63ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S4T9Q9_9STRA1.600e-2276.12ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A7S2JVK3_9STRA2.090e-2277.61ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8BRT2_THAPS2.180e-2276.12ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S4ALX1_9STRA3.260e-2276.12ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1FUN7_9STRA4.540e-2273.53ATP-dependent Clp protease proteolytic subunit n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9996contigH-elongata_contig9996:4563..6385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue6.4e-15
Seed eggNOG ortholog35128.Thaps1738
Preferred nameCLPP4
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
EggNOG free text desc.Clp protease
EggNOG OGs2XAZV@2836,COG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1313
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9996.17308.1prot_H-elongata_contig9996.17308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9996 4974..5645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931387.0515692-UTR-H-elongata_contig9996:4562..49731622931387.0515692-UTR-H-elongata_contig9996:4562..4973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9996 4563..4973 +
1691679815.3598692-UTR-H-elongata_contig9996:4562..49731691679815.3598692-UTR-H-elongata_contig9996:4562..4973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9996 4563..4973 +
1622931387.0916154-UTR-H-elongata_contig9996:5645..63851622931387.0916154-UTR-H-elongata_contig9996:5645..6385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9996 5646..6385 +
1691679815.3909893-UTR-H-elongata_contig9996:5645..63851691679815.3909893-UTR-H-elongata_contig9996:5645..6385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9996 5646..6385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931387.0624647-CDS-H-elongata_contig9996:4973..50121622931387.0624647-CDS-H-elongata_contig9996:4973..5012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9996 4974..5012 +
1691679815.3741076-CDS-H-elongata_contig9996:4973..50121691679815.3741076-CDS-H-elongata_contig9996:4973..5012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9996 4974..5012 +
1622931387.0765407-CDS-H-elongata_contig9996:5522..56451622931387.0765407-CDS-H-elongata_contig9996:5522..5645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9996 5523..5645 +
1691679815.3825707-CDS-H-elongata_contig9996:5522..56451691679815.3825707-CDS-H-elongata_contig9996:5522..5645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9996 5523..5645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9996.17308.1

>prot_H-elongata_contig9996.17308.1 ID=prot_H-elongata_contig9996.17308.1|Name=mRNA_H-elongata_contig9996.17308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MSEYTDQPVDKIEEDTDRDFFMTPHEAMEYGLIDEVIKTKTSGIALPQMP
FLA*
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mRNA from alignment at H-elongata_contig9996:4563..6385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9996.17308.1 ID=mRNA_H-elongata_contig9996.17308.1|Name=mRNA_H-elongata_contig9996.17308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1823bp|location=Sequence derived from alignment at H-elongata_contig9996:4563..6385+ (Himanthalia elongata Himel1 dioecious)
TACCACAGCCAGACCGAGCCGGCCCGCGACCGGTCATATATTTTAAAGGC
GCATATGCACCCGCTGAACTTTCTTTCAGTGTTAGCTGTTGTATGATTTT
TATCCATACTAATATTATTAGTTCTAAATGTAGCATCACGTCAAGAGGGC
AGACGAGTTGGATCCATGATAACTGATCACTACGGACAAATATGCGTATC
TCGAGATTGTATTTTACTTAGCGCGAACACGAATGTATTAGTCAGCTTCT
AAAGGAATATATATCGTTTAGCAACTGAAATCTCCCTTAATCCTACCTTA
CCCGGTGGATATTCCTAACGGGGAAGATACGGCGTCTGAGTCTTGAATTC
GTGGGTTCCATTTTGGCAGGCGAAGGAGATCCTCTTCACGAAGCGCCTAC
TCAATAGGTATATGTCAGAGTACACGGATCAGCCTGTTGATAAAATTGAG
GTGAGTATTTGCGCTCAAAAAACCCGTGTTCAGTCTTCCGATTTGATAAT
TTAGTCGCATTTTTTCCAGCTCTACAAGTTTTATATCCAAGGAGCTAAGG
CGAGGATTATTTGGAGTGTATCAATAAATGAAGATAATTTGGAGACTAGA
GTACTGTGTGCTCTTCTTTTCATCTTCGAGGTTCATGATCACCCCCATGT
TGCATCATACACCATGTATCATACATATTTTTTACCACAATAAAATGACA
GACATCGTTTCCCCCCCGAAATTTGAATCATTGTTTCACAAAATAATAGA
CGACTTTGGAGAATATGACCGATTTTCACGGACAAACTTCGATCACCTCC
AAGCCGGTAGATGGGGGGGTTCCACTCAAATCAAGACGATTTAGTAGGCA
TTTTGTGAACGCTACTTGGAAGATAAAATCTCGTCCCCAAGTCGTTGTTC
TCACCCCACTCGCCGCCTGTGGGGTCTTCGCTTGTTTCGTGAAATTGGTC
CGCTCTCCAGGAGGATACTGATCGCGACTTCTTCATGACTCCGCACGAGG
CAATGGAGTACGGGCTGATTGATGAAGTTATTAAGACCAAGACGAGTGGC
ATCGCGCTCCCCCAGATGCCATTCCTCGCATAGGAGGCAGAAGTAGATAT
AGTACTCTCAAGCGTACTTTAGATATATTCTGAGCGACGACGAGTTGCAC
TTCCTAGATCCGCTTATCTCGATCGTTCTTTTTTGGATCCGAAGGAAGGA
CGGTGGTGCACATTTCGCACTTGCCAAGAATGTTTGGATGATTCAAGGGT
ACCCAACGAAGATGCCAACATTTTGTGTAATATTATTTTTTCCCGACGGA
TTATCTATATTTTTTCGACAATAATACACTTCGGCGCTGAGGGCCGCTTT
CATTATAGTACGTATGTTTTGGAAAAATGAAACTAGTGGTGGCGCTCGCG
AGCCCGCAGATTAAGAAAGGAAGATACAATCATTGTTAGTAGTAAGATGA
TACTTTCCTGGGACTGTGATCTTTACGGGATTTCTCTTGATTTGCCTGGA
GCGACAGGAGGGACTGACTGCCAAAGTATCTTCACGGAGACAGCGCAGAG
CGCTTTTCATTGACATATATCGCAACTGAGAGACAAGCCTCGGGTTAATT
CCGGAATGTTCACGCAAATATAATATATATTTGTTGATATTCCAGGAGAC
ATAAATAGCAAAACCACCACAATCTAAACGAACGCTAGAAATCGTCGAGA
ACCTGCGACCACAGGGTATGCCCAAATGATCATGCGCAACTACCCAAGTC
GCGCAGTCATCGATACCTCTTGAGAAATTACACGATTGCTACCCATCCGC
TCTGAACGCCGAGTCGTACCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig9996:4563..6385+

>mRNA_H-elongata_contig9996.17308.1 ID=mRNA_H-elongata_contig9996.17308.1|Name=mRNA_H-elongata_contig9996.17308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig9996:4563..6385+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGAGTACACGGATCAGCCTGTTGATAAAATTGAGATGTCAGAGTA
CACGGATCAGCCTGTTGATAAAATTGAGGAGGATACTGATCGCGACTTCT
TCATGACTCCGCACGAGGCAATGGAGTACGGGCTGATTGATGAAGTTATT
AAGACCAAGACGAGTGGCATCGCGCTCCCCCAGATGCCATTCCTCGCATA
GGAGGATACTGATCGCGACTTCTTCATGACTCCGCACGAGGCAATGGAGT
ACGGGCTGATTGATGAAGTTATTAAGACCAAGACGAGTGGCATCGCGCTC
CCCCAGATGCCATTCCTCGCATAG
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