prot_H-elongata_contig98092.17158.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98092.17158.1
Unique Nameprot_H-elongata_contig98092.17158.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length76
Homology
BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.960e-20
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQAVMETED 75
            +QAKRE+RFFENRH+GA AK K  IK +I +NIELLAP AA DREKTL A+ D  KQ KASAAASK++A+METED
Sbjct:   62 VQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135          
BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.030e-19
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 0
Query:    1 MQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQAVMETED 75
            +QAKRE+RFFENRH+GA AK K  IK +I +NIELLAP AA DREKTL A+ D  KQ KASAAASK++ +METED
Sbjct:  100 VQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173          
BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.910e-5
Identity = 30/69 (43.48%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 MQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQA 69
            +QA+RE+RFF+ RH+   A+ K  I+ ++  NIELL P AA DREK LA V++ ++Q+++  A ++++A
Sbjct:  100 VQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAKA 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ76_ECTSI2.960e-2070.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA78_9PHAE3.030e-1969.33TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA2.910e-543.48RL30, ribosomal protein 30 60S large ribosomal sub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98092contigH-elongata_contig98092:141..1149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98092.17158.1mRNA_H-elongata_contig98092.17158.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98092 132..1149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98092.17158.1 ID=prot_H-elongata_contig98092.17158.1|Name=mRNA_H-elongata_contig98092.17158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAA
VRDGVKQQKASAAASKSQAVMETED*
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