mRNA_H-elongata_contig98092.17158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98092.17158.1
Unique NamemRNA_H-elongata_contig98092.17158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.520e-22
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 VKEMQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQAVMETED 234
            VKE+QAKRE+RFFENRH+GA AK K  IK +I +NIELLAP AA DREKTL A+ D  KQ KASAAASK++A+METED
Sbjct:   59 VKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135
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BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.670e-21
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 VKEMQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQAVMETED 234
            VKE+QAKRE+RFFENRH+GA AK K  IK +I +NIELLAP AA DREKTL A+ D  KQ KASAAASK++ +METED
Sbjct:   97 VKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173
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BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.250e-6
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 VKEMQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAAVRDGVKQQKASAAASKSQA 216
            V E+QA+RE+RFF+ RH+   A+ K  I+ ++  NIELL P AA DREK LA V++ ++Q+++  A ++++A
Sbjct:   97 VTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAKA 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98092.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ76_ECTSI2.520e-2271.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA78_9PHAE2.670e-2170.51TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA2.250e-644.44RL30, ribosomal protein 30 60S large ribosomal sub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98092contigH-elongata_contig98092:132..1149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue8.1e-16
Seed eggNOG ortholog2880.D7FZ76
Preferred nameRSL24D1
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
EggNOG free text desc.assembly of large subunit precursor of preribosome
EggNOG OGsCOG2075@1,KOG1723@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-13_002830.1
Exons2
Model size237
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98092.17158.1prot_H-elongata_contig98092.17158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98092 141..1149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931372.115922-UTR-H-elongata_contig98092:131..1401622931372.115922-UTR-H-elongata_contig98092:131..140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98092 132..140 +
1691679809.3076296-UTR-H-elongata_contig98092:131..1401691679809.3076296-UTR-H-elongata_contig98092:131..140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98092 132..140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931372.130049-CDS-H-elongata_contig98092:140..3111622931372.130049-CDS-H-elongata_contig98092:140..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98092 141..311 +
1691679809.3201728-CDS-H-elongata_contig98092:140..3111691679809.3201728-CDS-H-elongata_contig98092:140..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98092 141..311 +
1622931372.1478293-CDS-H-elongata_contig98092:1092..11491622931372.1478293-CDS-H-elongata_contig98092:1092..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98092 1093..1149 +
1691679809.3309157-CDS-H-elongata_contig98092:1092..11491691679809.3309157-CDS-H-elongata_contig98092:1092..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98092 1093..1149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98092.17158.1

>prot_H-elongata_contig98092.17158.1 ID=prot_H-elongata_contig98092.17158.1|Name=mRNA_H-elongata_contig98092.17158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MQAKREQRFFENRHRGAKAKIKERIKVDIMNNIELLAPPAAQDREKTLAA
VRDGVKQQKASAAASKSQAVMETED*
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mRNA from alignment at H-elongata_contig98092:132..1149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98092.17158.1 ID=mRNA_H-elongata_contig98092.17158.1|Name=mRNA_H-elongata_contig98092.17158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-elongata_contig98092:132..1149+ (Himanthalia elongata Himel1 dioecious)
GTGAAAGAGATGCAGGCGAAGAGGGAGCAGCGATTCTTCGAAAACCGGCA
CCGCGGAGCGAAGGCCAAGATCAAGGAGAGGATCAAGGTGGACATAATGA
ACAACATCGAGCTGCTCGCGCCTCCGGCGGCACAAGATCGCGAGAAAACG
CTGGCCGCTGTCAGGGACGGGGTCAAACAGGTGATGTGGAAGATGGAAGA
AGCTGTTTAGTTTCTCCTGTATTTCGGTTTGTATTGGAGGGAGGGGGAGC
CAAAAAATATGTTCTTGAAATTATGTCTATTTTTATTTCTTGTTTATTAT
TTCTCTGTTGTTTCGACCCACCCCCCATACGCCCCGAAGAAAAAGGATGT
AAGCGTTCGAGCAGAATGAAGGTTACACTAAGAGAGAAAGAGGCCCATTG
TGTGCGAAGAACTATACAATTAAATCGAGTAGAAAGCCTTGAAACGTCCC
CGTTCCCCGTTCTCGTCCCCTTCCTGGTGTAAATCTTGCGGCAAAATAAT
ATTTACCCTATTGATAGCATTACGAGTCTTTTCGGACATTCTCAGTATGT
TTTGAGGGAAATATAAGAATGTTTGATGGGGTGAAGGAGGGGGGGGCATG
AAGCTGGAGCTGGGACCTCTTGTTCAAAGCAACGAAGGCGAAGGAAATAT
TTTACCGAAGAGCGGGCCGCGCCTGGCGACATCGTGTGACTCCCTCGACC
CCGTGATGATGCCGTGCTGAGCCGTGCCGTCCTTTGTAGATGATGCCGTG
CTCTCTGGGACTTGGTGATGCGTTGGGGGGTCGGATCAAAAACGAAGTTA
GATAGTATTTACTTGATACTGTACGAAGAAATGAATACCTGTCGTTTAAT
CTGTGATAGCACATTGGAGAGCTACTGGCCGAAGTATGGTGTACAATTGC
ATTCCCGCGTCAGTTTCAACTTGTGTTTCCCTCTCGTCCCCCCCCGTCCC
GAACCCACGAGCAGAAAGCCTCCGCAGCAGCATCAAAATCCCAAGCGGTG
ATGGAGACGGAAGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig98092:132..1149+

>mRNA_H-elongata_contig98092.17158.1 ID=mRNA_H-elongata_contig98092.17158.1|Name=mRNA_H-elongata_contig98092.17158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig98092:132..1149+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGCGAAGAGGGAGCAGCGATTCTTCGAAAACCGGCACCGCGGAGC
GAAGGCCAAGATCAAGGAGAGGATCAAGGTGGACATAATGAACAACATCG
AGCTGCTCGCGCCTCCGGCGGCACAAGATCGCGAGAAAACGCTGGCCGCT
GTCAGGGACGGGGTCAAACAGATGCAGGCGAAGAGGGAGCAGCGATTCTT
CGAAAACCGGCACCGCGGAGCGAAGGCCAAGATCAAGGAGAGGATCAAGG
TGGACATAATGAACAACATCGAGCTGCTCGCGCCTCCGGCGGCACAAGAT
CGCGAGAAAACGCTGGCCGCTGTCAGGGACGGGGTCAAACAGCAGAAAGC
CTCCGCAGCAGCATCAAAATCCCAAGCGGTGATGGAGACGGAAGACTGAC
AGAAAGCCTCCGCAGCAGCATCAAAATCCCAAGCGGTGATGGAGACGGAA
GACTGA
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