prot_H-elongata_contig9464.16881.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9464.16881.1
Unique Nameprot_H-elongata_contig9464.16881.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length236
Homology
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.600e-58
Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 0
Query:    5 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGN------RYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIV-QLQQALEQAGVSVKFLARTLRCEG 200
            ++EVLCRVV+VDSEGLSDG S+KNT   LAPKMLIV GGSRRAKA+LVS+VR  ++  A  A R+A       XXXXXXXXXXXX          R+VVV++A+EP+PV LDSGAFDVLLHDSLH+ LKWKQL NY VAH ECRVDPRG VPLLCAKPR ER+GHPAMFLSVG V++  Q+ Q      +S  F++   RC G
Sbjct:  798 ELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVRHAVEPAA--AGRRAXXXXXXXXXXXXXXXXXXXXXXXXXDVACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRVDPRGDVPLLCAKPRAERVGHPAMFLSVGKVNVTPQILQVNWLETISQSFMSHH-RCLG 997          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.360e-29
Identity = 81/247 (32.79%), Postives = 125/247 (50.61%), Query Frame = 0
Query:    5 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPR---GGV---------PLLCA---KPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGTRL-ELEGPLCDAYFRVRQVVYQQYTIV 235
            ++ V  RV ++D EGLSDGRS++N +  + P+ L+++GGS +A + L    R +    A                                V   R+ + +   LD+  FDVL+HDSL+++L+W+ +K YE+A  +  V P+    GV         P+L     +  GE  G PA+F+S GDV + QL  AL +AG++    A  L   G + V      L +++GPL D YF VR ++Y+QYTIV
Sbjct:  641 ELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDARDRHICSA--------------------------------VFTPRSGDTVRAALDTDVFDVLVHDSLYTRLRWQSVKGYELAQVDSAVAPQPRPSGVLGKRERPPPPILFPPQDREEGET-GRPAVFVSFGDVQLTQLSTALRKAGMTTALAAAKLTVSGTIVVTKGADGLLKIDGPLSDTYFAVRSIMYRQYTIV 854          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: UPI001F043033 (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043033)

HSP 1 Score: 94.0 bits (232), Expect = 2.270e-18
Identity = 66/248 (26.61%), Postives = 109/248 (43.95%), Query Frame = 0
Query:    6 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECR-----------------VDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV--RMEGTRLELEGPLCDAYFRVRQVVYQQYTI 234
            + + C  +++D EG SDG SIK  V  + P+ L+V+ GS  A   L  + RK +D +                               + V      E +    +S  + ++L DSL S L++ Q ++ E+A  + +                 VD    VP+L   P  E  GH  +F++  D  +   +Q L++ G+  +F    L C GGV    R E  R+ L+G +CD Y+ +RQ++Y Q+ I
Sbjct:  536 INIKCSYLYIDFEGRSDGESIKRIVSIVKPRQLVVIHGSPDATKHLAEYCRKNIDMEV------------------------------KTVFTPNTGETVDATRESHIYQIILRDSLVSSLQFSQTRDAEIAWVDGQLVREQLKSLVHDQENMDVDTFDSVPVLEQLPLAEIPGHDQVFIN--DPRLSDFKQILQKNGIQAEFNGGVLVCCGGVIAITRNEAGRIGLDGAICDEYYVIRQMLYDQFAI 751          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A1E1XLS1_9ACAR (Cleavage and polyadenylation specificity factor subunit 2 n=18 Tax=Ixodidae TaxID=6939 RepID=A0A1E1XLS1_9ACAR)

HSP 1 Score: 91.3 bits (225), Expect = 1.910e-17
Identity = 70/255 (27.45%), Postives = 114/255 (44.71%), Query Frame = 0
Query:    1 EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRV-------------------DPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            E ++Q++V   + F+D EG SDG S++  V+ + P+ +I++ GS  A   + +  R                GA  G                  V   R  E +    +S  + V L DSL S L++ + KN E+A  +  +                   +PR  + +L   P  +  GH  +F  V ++ +   +Q L + GV  +F    L C G V VR  E  R+ +EG LC+ YF+VR+++YQQY I+
Sbjct:  517 ETSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRVILVRGSPEATQAMAAFCRSS--------------GAVQGR-----------------VFTPRMNELVDATTESHIYQVKLRDSLVSSLQFSRAKNAELAWLDGEIATEEHLAPDGMQEDILDVDEPRDSMYILQPLPPSQVPGHATIF--VNELKLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRRNEAGRINIEGCLCEDYFKVREILYQQYAII 738          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A0E0CG53_9ORYZ (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CG53_9ORYZ)

HSP 1 Score: 88.2 bits (217), Expect = 2.270e-16
Identity = 61/240 (25.42%), Postives = 107/240 (44.58%), Query Frame = 0
Query:    6 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGT----------RLELEGPLCDAYFRVRQVVYQQYTIV 235
            V+V C + ++D EG SDGRS+K+ + ++AP  L+++ GS  A   L  H  K  D                                  +V   +  E + V  D  ++ V L + L S +  K+L  +E+A  +  V  +    L    P      H ++   VGD+ +   +Q L   G+ V+F    LRC   +T+R  G           ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct:  661 VQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKSSD---------------------------------LHVYAPQIEETIDVTSDLCSYKVQLSEKLMSNVISKKLGEHEIAWVDAEVG-KADDKLTLLPPSSTPAAHKSVL--VGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 864          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 5.450e-16
Identity = 58/234 (24.79%), Postives = 112/234 (47.86%), Query Frame = 0
Query:    6 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHT--ECRVDPRGGVPLLCAK-PRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV-RMEGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            + V  R+  VD +G++DGR+I+N + N+ P+ LI++ G+    ++L   V   +               P+                   V     +E + +  D+  + + + +SL++ + ++++  +EVA+   +  V     VP+L      G R  H  + LS G + +  ++Q L +AG + KF    L C  GV + R     + +EG L  +Y+R+RQ++Y+Q+T+V
Sbjct:  541 IHVAARITHVDFDGVADGRAIRNCLSNVKPRKLILVHGTEDTTSELKRFVESSI---------------PM----------------CEAVFTPNVMECIDIESDTNVYKLAVKESLYTSVVFRKVGTHEVAYVTGQLAVTENSSVPVLQNMGEHGGRTLHEPILLSDGKMKLDVMKQVLGKAGFNAKFRGGMLVCNDGVVLKRALNNEIVMEGALSSSYYRIRQLLYEQFTLV 743          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A8B8DS06_CRAVI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DS06_CRAVI)

HSP 1 Score: 86.7 bits (213), Expect = 7.440e-16
Identity = 64/247 (25.91%), Postives = 112/247 (45.34%), Query Frame = 0
Query:    4 VQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLD-----------GDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLS---VGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            V +++   + ++D EG SDG SIK  +  + P+ LI++ G+  A   L  H RK              G+ +   R++                   A       +D  L+      D+GA    ++++   ++  ++ +           DP   VP L A P  + +GH A+F++   + D  +V LQ+     G+  +F+A  L C   V VR  E  R++LEG +C+ +F++RQ++Y QY IV
Sbjct:  527 VTLDINANIQYIDFEGRSDGESIKKILLQIKPRQLILVRGTTEATEALAEHCRKNEGVVQGNIFLPHIGEVVDVTRESHIFQVRLRDYVVSALEFAKAKETELAWIDGILDLSQGKADTGA----MYEAEEGEVTEEKSRKRTDGMLNGEEDPMEVVPTLEAMPHNQFVGHKAVFINEPKLSDFKLVLLQE-----GIQAEFIAGVLICNNNVAVRRNEAGRIQLEGTICEDFFKIRQILYNQYAIV 764          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: R7V1Z3_CAPTE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V1Z3_CAPTE)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15
Identity = 66/243 (27.16%), Postives = 106/243 (43.62%), Query Frame = 0
Query:    6 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVD------------PRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            +E+   ++++D EG SDG S++  +  + P+ LI++ GSR +   L +  R   D               +G                  V   R  E +    +S  F V L DS+ S L + + ++ E+A  +  +D            P     +    P  +   H A+F  V +  +   +Q L   GV  +F A  L C   V VR  E  RL+LEG LCD Y+R+RQ++Y+Q+ IV
Sbjct:  520 LELRANILYIDFEGRSDGDSMRKIISQVRPRQLILVRGSRESTESLAAFCRDAPD---------------IGK-----------------VYTPRLNELVDATTESKIFQVRLKDSVVSALNFSKARDAEIAWIDAMLDLNQAEAMEDGENPEDEEAVPVVIPTSQIRPHGAVF--VNEPKLSDFKQTLVNLGVQAEFSAGVLICNSVVAVRKNEAGRLQLEGTLCDDYYRIRQLLYEQFAIV 728          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A8K1FDQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDQ3_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 2.160e-15
Identity = 61/237 (25.74%), Postives = 112/237 (47.26%), Query Frame = 0
Query:    4 VQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHT--ECRVDPRGGVPLLC--AKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV-RMEGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            V + +  RV  VD  GL+DGR+I+N + N+ P+ LI++ G+     +L   V   ++  A  A                             V    ALE + +  D+  F +++ +SL++   ++++  +EVA+   E  +     +P+L   +     R  H  + LS G + +  ++Q L +AG + KF    L C  GV + R     + +EG L  +Y+++RQ++Y Q+T+V
Sbjct: 1834 VTLMISARVTHVDFGGLADGRAIRNCLSNVKPRKLILVHGTEETTHELKRFVESTIN--ACEA-----------------------------VFTPNALECIDIESDTNVFKLVVKESLYTSSVFRKVGTHEVAYVTGEYNIGENNALPVLQHPSDSNDVRPTHEPILLSDGKLKLDVMKQVLSKAGFNAKFRGGMLVCNDGVVLKRAMNNEIIVEGALSSSYYKIRQLLYDQFTLV 2039          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A2G8KW56_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KW56_STIJA)

HSP 1 Score: 85.1 bits (209), Expect = 2.780e-15
Identity = 68/264 (25.76%), Postives = 105/264 (39.77%), Query Frame = 0
Query:    4 VQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGG-------------------------------VPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 235
            V +++ C + ++D EG SDG SIK  V  + P+ L+++ GS  A   L  + R QL G                                  V      E +   L+S  + V L DSL S L +++ K+ E+   + ++D   G                               +  L A    E  GH  +F  V       ++Q + + G+  +F    L C   V VR  E  RL LEG LCD YF+VR ++Y+QY ++
Sbjct: 1055 VAIDLKCSLTYIDFEGRSDGESIKKLVLQVKPRQLVIVRGSPAATQTLAEYYRLQLSGSK--------------------------------VFTPGVNEVIDATLESHIYQVKLKDSLVSSLDFQKAKDIELTWIDGQLDLETGGRSLMLEEEDETEMETTAPGLEMKKKKADDRIATLDAVSVSEETGHSQVF--VNAPRFQDVKQVMTRNGILAEFTGGVLVCNSTVAVRRHESGRLCLEGTLCDDYFKVRDLLYEQYAVI 1284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI1.600e-5863.55Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA5.360e-2932.79Cleavage and polyadenylation specificity factor su... [more]
UPI001F0430332.270e-1826.61cleavage and polyadenylation specificity factor su... [more]
A0A1E1XLS1_9ACAR1.910e-1727.45Cleavage and polyadenylation specificity factor su... [more]
A0A0E0CG53_9ORYZ2.270e-1625.42Cleavage and polyadenylation specificity factor su... [more]
K3WHC0_GLOUD5.450e-1624.79Cleavage and polyadenylation specificity factor su... [more]
A0A8B8DS06_CRAVI7.440e-1625.91Cleavage and polyadenylation specificity factor su... [more]
R7V1Z3_CAPTE1.830e-1527.16Cleavage and polyadenylation specificity factor su... [more]
A0A8K1FDQ3_PYTOL2.160e-1525.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2G8KW56_STIJA2.780e-1525.76Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011108Zn-dependent metallo-hydrolase, RNA specificity domainPFAMPF07521RMMBLcoord: 6..58
e-value: 6.5E-5
score: 22.8
IPR025069Cleavage and polyadenylation specificity factor 2, C-terminalPFAMPF13299CPSF100_Ccoord: 168..232
e-value: 2.8E-10
score: 40.6
IPR027075Cleavage and polyadenylation specificity factor subunit 2PANTHERPTHR45922FAMILY NOT NAMEDcoord: 4..235
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 4..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9464contigH-elongata_contig9464:7931..9257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9464.16881.1mRNA_H-elongata_contig9464.16881.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9464 7931..9257 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9464.16881.1 ID=prot_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKAD
LVSHVRKQLDGDALRAARKAGGGAPLGGVRRAADDDDNNADGNRYVVVDR
ALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVP
LLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEG
GVTVRMEGTRLELEGPLCDAYFRVRQVVYQQYTIV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011108RMMBL
IPR025069Cpsf2_C
IPR027075CPSF2
IPR036866RibonucZ/Hydroxyglut_hydro