mRNA_H-elongata_contig9464.16881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9464.16881.1
Unique NamemRNA_H-elongata_contig9464.16881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.600e-58
Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   13 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGN------RYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIV-QLQQALEQAGVSVKFLARTLRCEG 600
            ++EVLCRVV+VDSEGLSDG S+KNT   LAPKMLIV GGSRRAKA+LVS+VR  ++  A  A R+A       XXXXXXXXXXXX          R+VVV++A+EP+PV LDSGAFDVLLHDSLH+ LKWKQL NY VAH ECRVDPRG VPLLCAKPR ER+GHPAMFLSVG V++  Q+ Q      +S  F++   RC G
Sbjct:  798 ELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVRHAVEPAA--AGRRAXXXXXXXXXXXXXXXXXXXXXXXXXDVACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRVDPRGDVPLLCAKPRAERVGHPAMFLSVGKVNVTPQILQVNWLETISQSFMSHH-RCLG 997          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.360e-29
Identity = 81/247 (32.79%), Postives = 125/247 (50.61%), Query Frame = 1
Query:   13 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPR---GGV---------PLLCA---KPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGTRL-ELEGPLCDAYFRVRQVVYQQYTIV 705
            ++ V  RV ++D EGLSDGRS++N +  + P+ L+++GGS +A + L    R +    A                                V   R+ + +   LD+  FDVL+HDSL+++L+W+ +K YE+A  +  V P+    GV         P+L     +  GE  G PA+F+S GDV + QL  AL +AG++    A  L   G + V      L +++GPL D YF VR ++Y+QYTIV
Sbjct:  641 ELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDARDRHICSA--------------------------------VFTPRSGDTVRAALDTDVFDVLVHDSLYTRLRWQSVKGYELAQVDSAVAPQPRPSGVLGKRERPPPPILFPPQDREEGET-GRPAVFVSFGDVQLTQLSTALRKAGMTTALAAAKLTVSGTIVVTKGADGLLKIDGPLSDTYFAVRSIMYRQYTIV 854          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: UPI001F043033 (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043033)

HSP 1 Score: 94.0 bits (232), Expect = 2.270e-18
Identity = 66/248 (26.61%), Postives = 109/248 (43.95%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECR-----------------VDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV--RMEGTRLELEGPLCDAYFRVRQVVYQQYTI 702
            + + C  +++D EG SDG SIK  V  + P+ L+V+ GS  A   L  + RK +D +                               + V      E +    +S  + ++L DSL S L++ Q ++ E+A  + +                 VD    VP+L   P  E  GH  +F++  D  +   +Q L++ G+  +F    L C GGV    R E  R+ L+G +CD Y+ +RQ++Y Q+ I
Sbjct:  536 INIKCSYLYIDFEGRSDGESIKRIVSIVKPRQLVVIHGSPDATKHLAEYCRKNIDMEV------------------------------KTVFTPNTGETVDATRESHIYQIILRDSLVSSLQFSQTRDAEIAWVDGQLVREQLKSLVHDQENMDVDTFDSVPVLEQLPLAEIPGHDQVFIN--DPRLSDFKQILQKNGIQAEFNGGVLVCCGGVIAITRNEAGRIGLDGAICDEYYVIRQMLYDQFAI 751          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A0A9Q413_ARUDO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9Q413_ARUDO)

HSP 1 Score: 89.7 bits (221), Expect = 1.380e-17
Identity = 63/240 (26.25%), Postives = 109/240 (45.42%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVR----------MEGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
            V+V C + ++D EG SDGRS+K+ + ++AP  L+++ GS  A   L     K  D                                  +V   +  E + V  D  A+ V L D L S +  K+L  +E+A  +  +  +    L+   P      H ++   VGD+ +   +Q LE  G+ V+F+   LRC   +TVR          M   ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct:  107 VQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMLFAKNPD---------------------------------LHVYAPQIEETIDVTSDLCAYKVQLSDKLMSNIISKKLGEHEIAWIDAEIG-KEDEKLILLPPSSTPPPHKSVL--VGDLKLADFKQFLENKGLQVEFVGGALRCGEYITVRKIGDSSQKGSMGSQQIVIEGPLCEDYYKIRELLYSQFYLL 310          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: B6U1S6_MAIZE (Cleavage and polyadenylation specificity factor subunit 2 n=8 Tax=Zea mays TaxID=4577 RepID=B6U1S6_MAIZE)

HSP 1 Score: 91.3 bits (225), Expect = 1.860e-17
Identity = 66/240 (27.50%), Postives = 108/240 (45.00%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGT----------RLELEGPLCDAYFRVRQVVYQQYTIV 705
            V+V C +V++D EG SDGRS+K+ + ++AP  LI++ GS  A   L  H  K LD                                  +V   +  E + V  D  A+ V L + L S +  K+L  +E+A  +  V  +    L+   P      H  +   VGD+ +   +Q LE  G  V+F    LRC   + VR  G           ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct:  470 VQVKCSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLD---------------------------------LHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVG-KEDEKLILLPPSSTPPPHKPVL--VGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 673          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A1E1XLS1_9ACAR (Cleavage and polyadenylation specificity factor subunit 2 n=18 Tax=Ixodidae TaxID=6939 RepID=A0A1E1XLS1_9ACAR)

HSP 1 Score: 91.3 bits (225), Expect = 1.910e-17
Identity = 70/255 (27.45%), Postives = 114/255 (44.71%), Query Frame = 1
Query:    1 EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRV-------------------DPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
            E ++Q++V   + F+D EG SDG S++  V+ + P+ +I++ GS  A   + +  R                GA  G                  V   R  E +    +S  + V L DSL S L++ + KN E+A  +  +                   +PR  + +L   P  +  GH  +F  V ++ +   +Q L + GV  +F    L C G V VR  E  R+ +EG LC+ YF+VR+++YQQY I+
Sbjct:  517 ETSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRVILVRGSPEATQAMAAFCRSS--------------GAVQGR-----------------VFTPRMNELVDATTESHIYQVKLRDSLVSSLQFSRAKNAELAWLDGEIATEEHLAPDGMQEDILDVDEPRDSMYILQPLPPSQVPGHATIF--VNELKLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRRNEAGRINIEGCLCEDYFKVREILYQQYAII 738          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A0E0CG53_9ORYZ (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CG53_9ORYZ)

HSP 1 Score: 88.2 bits (217), Expect = 2.270e-16
Identity = 61/240 (25.42%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGT----------RLELEGPLCDAYFRVRQVVYQQYTIV 705
            V+V C + ++D EG SDGRS+K+ + ++AP  L+++ GS  A   L  H  K  D                                  +V   +  E + V  D  ++ V L + L S +  K+L  +E+A  +  V  +    L    P      H ++   VGD+ +   +Q L   G+ V+F    LRC   +T+R  G           ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct:  661 VQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKSSD---------------------------------LHVYAPQIEETIDVTSDLCSYKVQLSEKLMSNVISKKLGEHEIAWVDAEVG-KADDKLTLLPPSSTPAAHKSVL--VGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 864          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 5.450e-16
Identity = 58/234 (24.79%), Postives = 112/234 (47.86%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHT--ECRVDPRGGVPLLCAK-PRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV-RMEGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
            + V  R+  VD +G++DGR+I+N + N+ P+ LI++ G+    ++L   V   +               P+                   V     +E + +  D+  + + + +SL++ + ++++  +EVA+   +  V     VP+L      G R  H  + LS G + +  ++Q L +AG + KF    L C  GV + R     + +EG L  +Y+R+RQ++Y+Q+T+V
Sbjct:  541 IHVAARITHVDFDGVADGRAIRNCLSNVKPRKLILVHGTEDTTSELKRFVESSI---------------PM----------------CEAVFTPNVMECIDIESDTNVYKLAVKESLYTSVVFRKVGTHEVAYVTGQLAVTENSSVPVLQNMGEHGGRTLHEPILLSDGKMKLDVMKQVLGKAGFNAKFRGGMLVCNDGVVLKRALNNEIVMEGALSSSYYRIRQLLYEQFTLV 743          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A8B8DS06_CRAVI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DS06_CRAVI)

HSP 1 Score: 86.7 bits (213), Expect = 7.440e-16
Identity = 64/247 (25.91%), Postives = 112/247 (45.34%), Query Frame = 1
Query:   10 VQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLD-----------GDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLS---VGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
            V +++   + ++D EG SDG SIK  +  + P+ LI++ G+  A   L  H RK              G+ +   R++                   A       +D  L+      D+GA    ++++   ++  ++ +           DP   VP L A P  + +GH A+F++   + D  +V LQ+     G+  +F+A  L C   V VR  E  R++LEG +C+ +F++RQ++Y QY IV
Sbjct:  527 VTLDINANIQYIDFEGRSDGESIKKILLQIKPRQLILVRGTTEATEALAEHCRKNEGVVQGNIFLPHIGEVVDVTRESHIFQVRLRDYVVSALEFAKAKETELAWIDGILDLSQGKADTGA----MYEAEEGEVTEEKSRKRTDGMLNGEEDPMEVVPTLEAMPHNQFVGHKAVFINEPKLSDFKLVLLQE-----GIQAEFIAGVLICNNNVAVRRNEAGRIQLEGTICEDFFKIRQILYNQYAIV 764          
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: R7V1Z3_CAPTE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V1Z3_CAPTE)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15
Identity = 66/243 (27.16%), Postives = 106/243 (43.62%), Query Frame = 1
Query:   16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVD------------PRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
            +E+   ++++D EG SDG S++  +  + P+ LI++ GSR +   L +  R   D               +G                  V   R  E +    +S  F V L DS+ S L + + ++ E+A  +  +D            P     +    P  +   H A+F  V +  +   +Q L   GV  +F A  L C   V VR  E  RL+LEG LCD Y+R+RQ++Y+Q+ IV
Sbjct:  520 LELRANILYIDFEGRSDGDSMRKIISQVRPRQLILVRGSRESTESLAAFCRDAPD---------------IGK-----------------VYTPRLNELVDATTESKIFQVRLKDSVVSALNFSKARDAEIAWIDAMLDLNQAEAMEDGENPEDEEAVPVVIPTSQIRPHGAVF--VNEPKLSDFKQTLVNLGVQAEFSAGVLICNSVVAVRKNEAGRLQLEGTLCDDYYRIRQLLYEQFAIV 728          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI1.600e-5863.55Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA5.360e-2932.79Cleavage and polyadenylation specificity factor su... [more]
UPI001F0430332.270e-1826.61cleavage and polyadenylation specificity factor su... [more]
A0A0A9Q413_ARUDO1.380e-1726.25Cleavage and polyadenylation specificity factor su... [more]
B6U1S6_MAIZE1.860e-1727.50Cleavage and polyadenylation specificity factor su... [more]
A0A1E1XLS1_9ACAR1.910e-1727.45Cleavage and polyadenylation specificity factor su... [more]
A0A0E0CG53_9ORYZ2.270e-1625.42Cleavage and polyadenylation specificity factor su... [more]
K3WHC0_GLOUD5.450e-1624.79Cleavage and polyadenylation specificity factor su... [more]
A0A8B8DS06_CRAVI7.440e-1625.91Cleavage and polyadenylation specificity factor su... [more]
R7V1Z3_CAPTE1.830e-1527.16Cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9464contigH-elongata_contig9464:7931..9257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue2.8e-51
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9464.16881.1prot_H-elongata_contig9464.16881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9464 7931..9257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.0857942-CDS-H-elongata_contig9464:7930..80981622931342.0857942-CDS-H-elongata_contig9464:7930..8098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 7931..8098 -
1691679797.2625182-CDS-H-elongata_contig9464:7930..80981691679797.2625182-CDS-H-elongata_contig9464:7930..8098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 7931..8098 -
1622931342.0987303-CDS-H-elongata_contig9464:8437..85871622931342.0987303-CDS-H-elongata_contig9464:8437..8587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 8438..8587 -
1691679797.2733495-CDS-H-elongata_contig9464:8437..85871691679797.2733495-CDS-H-elongata_contig9464:8437..8587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 8438..8587 -
1622931342.115413-CDS-H-elongata_contig9464:8867..92571622931342.115413-CDS-H-elongata_contig9464:8867..9257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 8868..9257 -
1691679797.2810452-CDS-H-elongata_contig9464:8867..92571691679797.2810452-CDS-H-elongata_contig9464:8867..9257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9464 8868..9257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9464.16881.1

>prot_H-elongata_contig9464.16881.1 ID=prot_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKAD
LVSHVRKQLDGDALRAARKAGGGAPLGGVRRAADDDDNNADGNRYVVVDR
ALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVP
LLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEG
GVTVRMEGTRLELEGPLCDAYFRVRQVVYQQYTIV*
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mRNA from alignment at H-elongata_contig9464:7931..9257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9464.16881.1 ID=mRNA_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1327bp|location=Sequence derived from alignment at H-elongata_contig9464:7931..9257- (Himanthalia elongata Himel1 dioecious)
GAATGGGCGGTACAGGTGGAGGTTCTATGCCGAGTGGTGTTCGTGGATTC GGAGGGCCTTTCGGACGGTCGTTCCATCAAGAACACGGTGCGCAACCTCG CGCCCAAGATGCTCATCGTCTTGGGTGGATCGCGCCGAGCCAAGGCCGAC CTGGTGTCGCACGTCCGAAAGCAGCTGGATGGTGACGCGCTCCGGGCCGC GAGGAAAGCTGGCGGGGGGGCGCCGTTGGGGGGAGTACGACGCGCCGCCG ACGATGACGACAACAACGCGGACGGTAACCGATACGTGGTGGTCGATCGC GCGTTGGAACCTTTACCCGTGGGGCTCGACTCTGGAGCCTTCGACGTCCT CTTGCACGACTCGCTGCACTCGCAGCTTAAGTGGAAACAGGTTGGAGCAC GAACCCAGCGAGGAAATGGACGCGCGGGTGTCAAGTTGAATTGCGGAGAT AAGAATGACCGCATTAGTGTTTGTGTCAGAGTTAGCGTTAGGGTTAGTCT CAGCGCGCTTCTTGACGGCAGGCGTAGATCGCTGCGCTTTCCCCGGTTGG TGCGCTCCGAGTGCGGCGTCCTCCTGCTGAGTTCTTCAGGTTTGTGCGCT CGTGCCGACACGATGCCCCGGTGCCCTCTTTTTGACACACCTCTCTCTTT CTTCCGTTCGTACGACACAGCTCAAAAACTACGAGGTCGCGCACACGGAG TGCCGCGTGGACCCAAGGGGAGGAGTGCCTTTGCTCTGCGCTAAGCCACG AGGGGAAAGGTTGGGACACCCGGCGATGTTCCTGAGCGTGGGAGATGTCC ACATCGTGCAGCTCCAGCAGGTGAGGTCGGAGAACGCTCTCTTCGCGTCG TCGAACGGTCAGCCGACGCGAAAATCGAACCACATACACCTCCATAAAAC GGTCGACGTTCGCTCTCCCCCCACTTTTTTTTTTTTAGTTGCCAGTCGGA TTATCGCGTGCGCTGTTTCACGTGACGCTGGCCTCGCATTGAAACCCTGT AAAGGGTCTCTCTCGCGCCAAACAAGTCTGAGTCCTTGGAAAGTCACACA CAAACATCGATCGGCTGGCTCCGCGCAATCGAGCTTGTCTGCCCCGGGCC TTAGCGCATTTCCCCGTCGATCTTTGCTCACGTAATGGCGCTCGATGCGA GCGTCGCAGGCCTTGGAGCAGGCCGGAGTGAGCGTGAAGTTTCTGGCGCG CACGTTGCGTTGCGAGGGAGGCGTTACGGTCCGCATGGAAGGTACTCGGT TAGAGCTCGAAGGACCGCTGTGCGACGCGTACTTCCGGGTTCGCCAAGTC GTTTACCAGCAGTACACGATCGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9464:7931..9257-

>mRNA_H-elongata_contig9464.16881.1 ID=mRNA_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig9464:7931..9257- (Himanthalia elongata Himel1 dioecious)
GAATGGGCGGTACAGGTGGAGGTTCTATGCCGAGTGGTGTTCGTGGATTC
GGAGGGCCTTTCGGACGGTCGTTCCATCAAGAACACGGTGCGCAACCTCG
CGCCCAAGATGCTCATCGTCTTGGGTGGATCGCGCCGAGCCAAGGCCGAC
CTGGTGTCGCACGTCCGAAAGCAGCTGGATGGTGACGCGCTCCGGGCCGC
GAGGAAAGCTGGCGGGGGGGCGCCGTTGGGGGGAGTACGACGCGCCGCCG
ACGATGACGACAACAACGCGGACGGTAACCGATACGTGGTGGTCGATCGC
GCGTTGGAACCTTTACCCGTGGGGCTCGACTCTGGAGCCTTCGACGTCCT
CTTGCACGACTCGCTGCACTCGCAGCTTAAGTGGAAACAGGAATGGGCGG
TACAGGTGGAGGTTCTATGCCGAGTGGTGTTCGTGGATTCGGAGGGCCTT
TCGGACGGTCGTTCCATCAAGAACACGGTGCGCAACCTCGCGCCCAAGAT
GCTCATCGTCTTGGGTGGATCGCGCCGAGCCAAGGCCGACCTGGTGTCGC
ACGTCCGAAAGCAGCTGGATGGTGACGCGCTCCGGGCCGCGAGGAAAGCT
GGCGGGGGGGCGCCGTTGGGGGGAGTACGACGCGCCGCCGACGATGACGA
CAACAACGCGGACGGTAACCGATACGTGGTGGTCGATCGCGCGTTGGAAC
CTTTACCCGTGGGGCTCGACTCTGGAGCCTTCGACGTCCTCTTGCACGAC
TCGCTGCACTCGCAGCTTAAGTGGAAACAGCTCAAAAACTACGAGGTCGC
GCACACGGAGTGCCGCGTGGACCCAAGGGGAGGAGTGCCTTTGCTCTGCG
CTAAGCCACGAGGGGAAAGGTTGGGACACCCGGCGATGTTCCTGAGCGTG
GGAGATGTCCACATCGTGCAGCTCCAGCAGCTCAAAAACTACGAGGTCGC
GCACACGGAGTGCCGCGTGGACCCAAGGGGAGGAGTGCCTTTGCTCTGCG
CTAAGCCACGAGGGGAAAGGTTGGGACACCCGGCGATGTTCCTGAGCGTG
GGAGATGTCCACATCGTGCAGCTCCAGCAGGCCTTGGAGCAGGCCGGAGT
GAGCGTGAAGTTTCTGGCGCGCACGTTGCGTTGCGAGGGAGGCGTTACGG
TCCGCATGGAAGGTACTCGGTTAGAGCTCGAAGGACCGCTGTGCGACGCG
TACTTCCGGGTTCGCCAAGTCGTTTACCAGCAGTACACGATCGTCTGAGC
CTTGGAGCAGGCCGGAGTGAGCGTGAAGTTTCTGGCGCGCACGTTGCGTT
GCGAGGGAGGCGTTACGGTCCGCATGGAAGGTACTCGGTTAGAGCTCGAA
GGACCGCTGTGCGACGCGTACTTCCGGGTTCGCCAAGTCGTTTACCAGCA
GTACACGATCGTCTGA
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