prot_H-elongata_contig88333.16361.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88333.16361.1
Unique Nameprot_H-elongata_contig88333.16361.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length238
Homology
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A438CFA8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CFA8_VITVI)

HSP 1 Score: 157 bits (396), Expect = 3.660e-40
Identity = 97/252 (38.49%), Postives = 138/252 (54.76%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLCAMK---------------RDEEQAVRD---LCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGV--TKTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            GVW +VE P G   +G + VFK K D  GKIE+YK  LV +G+ Q +GI ++E+ SP   + S R++ +I+A    E  Q+DV  A+L  D++EE+Y+E P  + +  K+  V  L K++YGL  A   C                   D +  +     L + F +KDLGEASY LG  I RDR  G L   Q  YI+ + +RF +   K++  P V G K  SK+  PQ D + EEM+ IPY  +VG+LM
Sbjct:  846 GVWDLVELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQCGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLM 1096          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A438EN28_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN28_VITVI)

HSP 1 Score: 150 bits (378), Expect = 3.740e-38
Identity = 95/251 (37.85%), Postives = 134/251 (53.39%), Query Frame = 0
Query:    9 VWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAY--RDSRKQVGLLKKAMYGLVHAGLLCAMK--------RDEEQAVRD----------LCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTS--ILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            VW +VE P G   +G + VFK K D  G IE+YK  LVA+GF Q +GI Y E+ SP   + S+R++ +++A    E +Q+DV  A+L  ++EEE+Y++ PE +   D  + V  LKK++YGL  A   C  K         D   A  D          L   F +KD+GEASY +G  I RDR  G L   Q  YI  + ERF +   S  + P V G +  +    P+ D + E+M+ IPY   VG+LM
Sbjct:  269 VWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDR-FNLDQCPKNDLEREQMKNIPYASAVGSLM 518          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A7N2MRX3_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MRX3_QUELO)

HSP 1 Score: 149 bits (377), Expect = 1.220e-37
Identity = 93/245 (37.96%), Postives = 138/245 (56.33%), Query Frame = 0
Query:    1 MDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELP---EAYRDSRKQVGLLKKAMYGL-VHAGLLCAMKRDEEQAV---RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSILPS-VAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            MD      VW++V+ P G+  +G + V K K   DG I+KYK  LVA+G+ Q +GI YEE+ SP     SIR++ +I+A L  E  Q+DV  A+L  +++EEIY++ P   E     RK   L +K++  L ++ G +     D E  V   R L S F +KD+GEA+Y LG  I RDR+   L   Q  YI+T+ ERF +  +  + + +  G  LS  D P+++    EM ++PY   VG+LM
Sbjct:  695 MDSMAKNQVWELVDLPPGRKTIGNKWVLKIKRKADGSIDKYKARLVAKGYTQREGIDYEETFSPVVRFVSIRLILAIVAHLDLELFQMDVKTAFLNGELDEEIYMDQPIGFEVKEQGRKVCRLKRKSLLILSLYVGDILLAGNDMEMIVTTKRWLSSIFEMKDMGEANYVLGVKIFRDRSKKLLGLFQETYIKTILERFRMHNSKPIDTPIEKGHTLSLEDCPKSEKGKREMARVPYASAVGSLM 939          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 144 bits (363), Expect = 3.980e-36
Identity = 91/279 (32.62%), Postives = 136/279 (48.75%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAG------------------------------------LLCAMKRDEEQAV----------RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKT-SILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            G + +VE PK   ++G++ VF+ K + + +IE YK  LVAQGF QV GI + E+ +P    ASI ++ ++ A   WE  Q+DV  AYL  D+EEEIY++ P    +  K+  V  LK+ +YGL  +G                                    LL A+  D+              R++ + F++ DLGE  + LG  + RDR+  TL   QH YI  +  RF +    S+   +  G  LS    P T    E+M+ IPYRE++G+LM
Sbjct:  142 GTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLM 420          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A438CCC3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CCC3_VITVI)

HSP 1 Score: 144 bits (364), Expect = 6.520e-36
Identity = 94/246 (38.21%), Postives = 136/246 (55.28%), Query Frame = 0
Query:   12 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAG---------------LLCAMKRDEEQAVRDLCSC-FRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGV--TKTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            +VE P G   +G + VFK K D  GKIE+YK  LV +G+ Q +GI ++E+ SP   + S R++ +I+A       Q+DV +A+L  +++EE+Y+E P  + +  K+  V  L K++YGL  A                LL +   D     + + S  F +KDLGEASY LG  I RDR  G L   Q  YI+ + +RF +   K++  P V G K  SK+  PQ D + EEMR IPY  +VG+LM
Sbjct:  532 LVELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLALHQMDVKIAFLNGNLDEEVYMEQPTGFVEVGKEDLVCKLNKSIYGLKQASSGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKSTKEPIVKGDK-FSKAQCPQNDDEKEEMRIIPYSSVVGSLM 776          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A5N5FRN8_9ROSA (Retrotransposon protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FRN8_9ROSA)

HSP 1 Score: 142 bits (359), Expect = 3.010e-35
Identity = 89/239 (37.24%), Postives = 131/239 (54.81%), Query Frame = 0
Query:    9 VWQVVERPKGKT-VLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLCAMKRDEEQAV-----RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSI--LPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            VW +V +P G T ++G + VFK K D  G ++K+K  LV +GF Q +GI Y E+ SP   + S+R++ +I A    E  Q+DV MA+L  D+EE+IY++    + +  K+  V  L K++YGL  A      K D+  A        +  C  +KDLGEA + LG  I RDR   +L   Q QYI  + +RF + K S   LP +  G  LS    P+ + + E M+  PY  +VG+LM
Sbjct:  480 VWSLVPQPPGITKIIGCKWVFKTKRDSQGNLDKHKARLVTKGFTQREGIDYNETFSPVSTKDSMRIILAITAHFDLELHQMDVKMAFLNGDLEEDIYMQQAPGFVERGKEAMVCKLNKSIYGLKQASRQWNKKFDQVMAASGFQENKMDECIYLKDLGEARFVLGIEIIRDRAKKSLGLSQRQYIDRVTKRFNMDKCSNGELP-IGKGDKLSSDQCPKNELENEGMKDKPYASLVGSLM 717          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A5ADW6_VITVI (RNA-directed DNA polymerase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ADW6_VITVI)

HSP 1 Score: 140 bits (353), Expect = 2.230e-34
Identity = 89/247 (36.03%), Postives = 130/247 (52.63%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLCAM----------KRDEEQAVRD---LCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSI--LPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            GVW +VE P G   +  + VFK K D  G+IE+YK  L+ +G+ Q +GI ++E+ SP   + S R++ +I+A    E  Q+DV  A+L  D++E++Y+E P  + +  K+  V  L K MY  V+      +            D    +     L + F +KDLGE SY LG  I RDR  G L   Q  YI+ + +RF +   S   +P V G +  SK+  PQ D + EE R IPY  +VG LM
Sbjct: 2050 GVWDLVELPHGCKPIACKWVFKTKCDYSGQIERYKARLMVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEDVYMEQPIGFVEVGKEDLVCKLNKCMYLRVNGSSYIFLVLYVDDILLESNDSNLLIETKHMLSTHFDMKDLGETSYVLGIKILRDRANGVLKLSQRTYIEKILKRFNMHNCSFARVPIVKGDR-FSKAQCPQNDDEREEKRTIPYSSLVGNLM 2295          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 138 bits (347), Expect = 5.610e-34
Identity = 91/269 (33.83%), Postives = 135/269 (50.19%), Query Frame = 0
Query:    1 MDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGL-LKKAMYGLVHAGLL---------------------------CAMKRDE--EQAVRDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVT--KTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            M      G W +VE P G+  +G++ V++ K   DG IE++K  LVA+GF Q  G  Y E+ + T  Q ++R V ++ A      R +D+  A++ +D++ EIY+  PE +R    ++   L K++YGL  A  L                            A K ++  ++ V  L   F+++DLG  SY LG  ITR+R    L   Q QYI    E FG+T  K +  P +     LSKS SPQT  +VEEM +IPY   VG+L+
Sbjct:  127 MTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLKQAPRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTP-MTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLL 394          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 137 bits (344), Expect = 3.330e-33
Identity = 88/277 (31.77%), Postives = 139/277 (50.18%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGL----------VHA---------------------------------GLLCAMKRDEE--QAVRDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGV--TKTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            G W +V R  G   +G R VF +K ++ G++ +YK  LVA+GF+Q  G+ + E+ SP     SIR+V S++ A  +   QLD D A+L +D++E++++E+P    ++   +  L KA+YGL          +HA                                  ++ A K ++E  +    L S F++K+LGE  + LG  I  DR   TLM  Q +YI  +  RF     K  + P  +G K L+K  SP T+A+ E+MR  PYR ++G L+
Sbjct:  867 GSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTKDNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMK-LTKMQSPTTNAEREDMRNKPYRSLIGCLL 1142          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A2N9F7V6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F7V6_FAGSY)

HSP 1 Score: 136 bits (342), Expect = 6.020e-33
Identity = 86/234 (36.75%), Postives = 129/234 (55.13%), Query Frame = 0
Query:    9 VWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELP---EAYRD-SRKQVGLLKKAMYGLVHAGLLCAMKRDEEQAVRDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSILPS-VAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM 237
            VW++V+ P G+  +G + V K K   DG I++YK  LVA+G+ Q +GI YE++ SP    ASIR++ SI+A    E  Q+DV  A+L  +++EEIY+  P   EA RD S K V     +M    H G             + L S F +KD+GEA++ LG  ITRDR+   L   Q  YI+ + ERF +  +  + + +  G  LS    P+ D +  +M ++PY   +G+LM
Sbjct:  715 VWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEALRDMSAKCVVSNVPSMVSNSHLGNAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLM 948          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438CFA8_VITVI3.660e-4038.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EN28_VITVI3.740e-3837.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A7N2MRX3_QUELO1.220e-3737.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GP19_9APHY3.980e-3632.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438CCC3_VITVI6.520e-3638.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5FRN8_9ROSA3.010e-3537.24Retrotransposon protein n=1 Tax=Pyrus ussuriensis ... [more]
A5ADW6_VITVI2.230e-3436.03RNA-directed DNA polymerase n=1 Tax=Vitis vinifera... [more]
E2LZP6_MONPE5.610e-3433.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H572_PHYRM3.330e-3331.77Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A2N9F7V6_FAGSY6.020e-3336.75Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..134
e-value: 1.5E-29
score: 103.3
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..128
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88333contigH-elongata_contig88333:690..1541 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88333.16361.1mRNA_H-elongata_contig88333.16361.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88333 675..2168 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88333.16361.1 ID=prot_H-elongata_contig88333.16361.1|Name=mRNA_H-elongata_contig88333.16361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGF
RQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVE
EEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLCAMKRDEEQAVRDLCS
CFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSIL
PSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like