prot_H-elongata_contig87846.16314.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87846.16314.1
Unique Nameprot_H-elongata_contig87846.16314.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-16
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:    3 ESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVH 67
            +SWFDLRL ILGFV++CRYLF D   ++IDSLS N  R+ +PRN SQDICE    HIR  + G H
Sbjct:  133 QSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAAL-GTH 196
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.300e-6
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0 
Query:    4 SWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVHEHSRRA 73
            SW D+R+CILGFV++CRYLF +   +K+ S       + N RN  QD+ E    H+R  + G H +   A
Sbjct:  615 SWTDIRVCILGFVSMCRYLFEEDSRFKV-SPRRPWPHFINQRNCGQDVIEHCFGHMRQGL-GSHRNPTAA 682
[Close]
BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.820e-5
Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 0 
Query:    4 SWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVHE 68
            SW D+R CILGFV + RY+FAD  L  ++       R+  PR  SQDI E    HIR  + G H+
Sbjct:  756 SWKDMRSCILGFVAMSRYIFADRDL--VEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGM-GTHK 817
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE2.250e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE4.300e-640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE2.820e-544.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87846contigH-elongata_contig87846:2038..2455 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87846.16314.1mRNA_H-elongata_contig87846.16314.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87846 1397..2681 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87846.16314.1 ID=prot_H-elongata_contig87846.16314.1|Name=mRNA_H-elongata_contig87846.16314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQD
ICEQISYHIRINIRGVHEHSRRA*
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