mRNA_H-elongata_contig87846.16314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87846.16314.1
Unique NamemRNA_H-elongata_contig87846.16314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.690e-24
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  137 IAFVDEWHDTLEQRKSKGG-GAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVH 427
            + F D+W  TLE++    G G ++ W+KHFI  +SWFDLRL ILGFV++CRYLF D   ++IDSLS N  R+ +PRN SQDICE    HIR  + G H
Sbjct:  100 LEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAAL-GTH 196
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-11
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:  137 IAFVDEWHDTLEQRKSKGGGAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVHEHSRRA 445
            + F D+W  +L+++ + G   +  W+KHFI   SW D+R+CILGFV++CRYLF +   +K+ S       + N RN  QD+ E    H+R  + G H +   A
Sbjct:  585 VRFFDKWRSSLQEKTTMG---DETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKV-SPRRPWPHFINQRNCGQDVIEHCFGHMRQGL-GSHRNPTAA 682
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.850e-10
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 2 
Query:  137 IAFVDEWHDTLEQRKSKGGGAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHI 403
            + F DEW  +LE R + G     DW+ HFI   SW D+R+CILG V++CRYLF     +KI  LSD    + N R   QDI E    H+
Sbjct:   72 LRFFDEWRASLEARPTLG-----DWKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVP-HFINLRCIGQDIVEHRYGHM 154
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.260e-8
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  110 ELRVVGGINIAFVDEWHDTLEQRKSKGGGAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSD 334
            +L  V  I + F DEW  +LE R + G GA   W+ HFI   SW D+R+CILG V++CRY+F +   +KI  LSD
Sbjct:  454 KLEEVMDILLLF-DEWRASLEARPTLGDGA---WKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSD 524
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BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.260e-7
Identity = 40/98 (40.82%), Postives = 50/98 (51.02%), Query Frame = 2 
Query:  137 IAFVDEWHDTLEQRKSKGGGAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQDICEQISYHIRINIRGVHE 430
            + F D W   L  R + GG     W  HFI   SW D+R CILGFV + RY+FAD  L  ++       R+  PR  SQDI E    HIR  + G H+
Sbjct:  729 LQFFDSWQSNL--RHTFGG----KWAPHFITDVSWKDMRSCILGFVAMSRYIFADRDL--VEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGM-GTHK 817
[Close]
BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.150e-6
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 2 
Query:  152 EWHDTLEQRKSKGGGAEVDWEKHFIMRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSD-NEGRYTNPR--NASQDICEQISYHIRINIRGVHEHSRR 442
            EW DT  Q  +  GG+++  +  F+  ++W DLRL ILGFV + RY+F D      D +++ + GRY   R  N + D CE+   HIR N +G H++ R+
Sbjct:  527 EWFDTWWQDLNLFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGD-----DDWVTEGSRGRYKFMRDWNQASDTCEKRFGHIRAN-QGCHKNPRK 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87846.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE8.690e-2453.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.140e-1136.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.850e-1043.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.260e-846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.260e-740.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE6.150e-638.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87846contigH-elongata_contig87846:1397..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1089
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87846.16314.1prot_H-elongata_contig87846.16314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87846 2038..2455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931279.6688933-UTR-H-elongata_contig87846:1396..20371622931279.6688933-UTR-H-elongata_contig87846:1396..2037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87846 1397..2037 -
1691679771.2420125-UTR-H-elongata_contig87846:1396..20371691679771.2420125-UTR-H-elongata_contig87846:1396..2037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87846 1397..2037 -
1622931279.7429533-UTR-H-elongata_contig87846:2455..26811622931279.7429533-UTR-H-elongata_contig87846:2455..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87846 2456..2681 -
1691679771.2746317-UTR-H-elongata_contig87846:2455..26811691679771.2746317-UTR-H-elongata_contig87846:2455..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87846 2456..2681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931279.6892056-CDS-H-elongata_contig87846:2037..21121622931279.6892056-CDS-H-elongata_contig87846:2037..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87846 2038..2112 -
1691679771.2502089-CDS-H-elongata_contig87846:2037..21121691679771.2502089-CDS-H-elongata_contig87846:2037..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87846 2038..2112 -
1622931279.7098317-CDS-H-elongata_contig87846:2308..24551622931279.7098317-CDS-H-elongata_contig87846:2308..2455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87846 2309..2455 -
1691679771.2644558-CDS-H-elongata_contig87846:2308..24551691679771.2644558-CDS-H-elongata_contig87846:2308..2455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87846 2309..2455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87846.16314.1

>prot_H-elongata_contig87846.16314.1 ID=prot_H-elongata_contig87846.16314.1|Name=mRNA_H-elongata_contig87846.16314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MRESWFDLRLCILGFVNICRYLFADLHLYKIDSLSDNEGRYTNPRNASQD
ICEQISYHIRINIRGVHEHSRRA*
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mRNA from alignment at H-elongata_contig87846:1397..2681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87846.16314.1 ID=mRNA_H-elongata_contig87846.16314.1|Name=mRNA_H-elongata_contig87846.16314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig87846:1397..2681- (Himanthalia elongata Himel1 dioecious)
ACTTTGAGTGTCCTCACATTGTTCGCGTCATGACCCGCATATGAAAAACG
ATAGGAAACTATGGTCGCACCAGCTATAAAAAATGCACAAGGTTGAATAA
TAAGTGGAAGAGCTACGTGTGGTCGGCGGAATCAACATAGCGTTCGTCGA
CGAGTGGCACGACACCCTCGAGCAAAGGAAATCAAAAGGGGGAGGGGCCG
AGGTAGACTGGGAGAAGCACTTCATAATGCGCGAGTCGTGGTTCGATTTG
CGTTTATGTATCCTCGGTTTCGTGAATATATGCCGTTACCTCTTCGCCGA
CCTACACTTATACAAGATCGACAGCTTGTCGGACAACGAGGGCCGTTACA
CCAACCCACGCAATGCCAGCCAGGTATGTTGGTTAGATGACGTTGAGGGG
AAGGGGTACGGTCAAGATGCTTTGTTTGGCGCGCGAAATGAACTCCTTTG
TCATTTTGATGTCACGTATTAAACGGCGCGGAAGGTATTCACCGCCTGGG
CCTACGGAATATATACCACGTTGCATATTTATGTATTGCCATCCACTGTC
CTGTTTAACGTCGGTGCAGGATATTTGTGAGCAGATATCTTATCATATTC
GCATAAACATTCGAGGCGTGCATGAACATTCGAGGCGTGCATGAACCTGG
GAACCCACAAGAATCCCACAGCCCGCATGGCGAAATCACGGTCCAGGCTG
GCGGACCCACAACGAGGCGTGCATGGACAGACACAACTAAATGCCAACAA
GAGCACTAGCGCTGGATACGATTTCAATCTGGCCAGCCTGAGGTGTAGGA
TCATGATAGCCGTAACGGACGAAGAGCGAAAAATTCCATTTTGAGCACAT
TCTAGGAATCTCCCTATGGCAGTTGTGTCCCCGTGCTTCATTGCATGGTT
AACCTAAGGAGATTGCAAACACTCTCGTACGGCGCGGTGATGTAAGGGTA
AGCGGGGGTGAACCTGTACATGGATAGATTTTTGAGTTGAGGACGAGAGT
GGCCTTTGTTTTGTTTATTGTGCATTATTTTACAAGAGATAGAGGTATTC
ACGACAAGACGGGTAGTAGAATGCCTAACACACCGGCATCCATGTAGGGA
CAATGATAATATCTCCGCAGATGACATGCGAATTATGACGTTTTCAATAT
TTACTCGTAGATCAAGGGTTGACATGCAACATTACCAGAAATATTGTTTT
GTGCAATTTGTAAATCTTTGGGATAAATATCCGAAAACGATGCGATTTGT
TGAGGGAGTTTTGCAAAAACACATAATCAAACGAA
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Coding sequence (CDS) from alignment at H-elongata_contig87846:1397..2681-

>mRNA_H-elongata_contig87846.16314.1 ID=mRNA_H-elongata_contig87846.16314.1|Name=mRNA_H-elongata_contig87846.16314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig87846:1397..2681- (Himanthalia elongata Himel1 dioecious)
ATGCGCGAGTCGTGGTTCGATTTGCGTTTATGTATCCTCGGTTTCGTGAA
TATATGCCGTTACCTCTTCGCCGACCTACACTTATACAAGATCGACAGCT
TGTCGGACAACGAGGGCCGTTACACCAACCCACGCAATGCCAGCCAGATG
CGCGAGTCGTGGTTCGATTTGCGTTTATGTATCCTCGGTTTCGTGAATAT
ATGCCGTTACCTCTTCGCCGACCTACACTTATACAAGATCGACAGCTTGT
CGGACAACGAGGGCCGTTACACCAACCCACGCAATGCCAGCCAGGATATT
TGTGAGCAGATATCTTATCATATTCGCATAAACATTCGAGGCGTGCATGA
ACATTCGAGGCGTGCATGAGATATTTGTGAGCAGATATCTTATCATATTC
GCATAAACATTCGAGGCGTGCATGAACATTCGAGGCGTGCATGA
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