prot_H-elongata_contig87320.16273.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87320.16273.1
Unique Nameprot_H-elongata_contig87320.16273.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length80
Homology
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6H5KKW2_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.990e-25
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    9 QALVRLG-SDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 80
            + L+RLG S +PNL +A+LVGG+ VAEN +TL  GCH+A+GTPGRVKFLI KG L+P++GR LVLESADWL+A
Sbjct:    2 ETLLRLGKSSVPNLTIASLVGGIAVAENARTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLVLESADWLMA 74          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: D8LRE2_ECTSI (DEAD domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.430e-23
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    8 QQALVRLG-SDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 80
            +  L+RLG + +PNL +A+LVGG+ V+EN +TL  GCH+A+GTPGRVKFLI KG L+ ++GR LVLESADWL+A
Sbjct:  146 KDTLLRLGKTSVPNLTIASLVGGIAVSENAQTLSAGCHVAIGTPGRVKFLIDKGVLVADTGRLLVLESADWLMA 219          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6H5KMB9_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.140e-21
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0
Query:   11 LVRLGSDIPNLAVATLVGGVPVAENNKTLKGG-CHIAVGTPGRVKFLIQKGTL-LPESGRTLVLESADWLIA 80
            L RLG  IP+L+VATL+GGVPV+EN+K L GG C++ VGTPGRVKFLI++GTL +  + RTLVL+SADWL+A
Sbjct:    2 LTRLGEGIPSLSVATLIGGVPVSENHKALAGGGCNVVVGTPGRVKFLIKEGTLRVSAAARTLVLDSADWLMA 73          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A2H1BUU4_FASHE (RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BUU4_FASHE)

HSP 1 Score: 76.3 bits (186), Expect = 2.010e-14
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    7 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 80
            SQ  L RLG+ +P L     VGG+P+A+N K L G CHIAVGTPGR+++LI+ G +  E+ R LVL+ AD L+A
Sbjct:  149 SQNVLERLGTHLPGLKCRLFVGGLPLADNLKHLPG-CHIAVGTPGRIRYLIETGYMTTENIRHLVLDEADLLLA 221          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A504ZB09_FASGI (RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A504ZB09_FASGI)

HSP 1 Score: 76.3 bits (186), Expect = 2.120e-14
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0
Query:    7 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 80
            SQ  L RLG+ +P L     VGG+P+A+N K L G CHIAVGTPGR+++LI+ G +  E+ R LVL+ AD L+A
Sbjct:  147 SQNVLERLGTHLPGLKCRLFVGGLPLADNLKHLPG-CHIAVGTPGRIRYLIETGYMTTENIRHLVLDEADLLLA 219          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A8E0RSJ7_9TREM (RNA helicase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RSJ7_9TREM)

HSP 1 Score: 73.2 bits (178), Expect = 2.630e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    7 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 80
            SQ  L RLG+ +P L     VGG+P+A+N K L+  CHIAVGTPGRV++LI+ G +  E  R LVL+ AD L+A
Sbjct: 1613 SQNVLERLGAHLPGLKCRLFVGGLPLADNLKHLQE-CHIAVGTPGRVRYLIETGYMSTEHIRHLVLDEADLLLA 1685          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A3M6V3Y6_POCDA (RNA helicase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V3Y6_POCDA)

HSP 1 Score: 71.2 bits (173), Expect = 1.230e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    8 QQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 79
            +  +  +GS++ NL     +GG+PV E+ K L+  CHIAVGTPGRVK+LI+   L  ES R  +L+ AD L+
Sbjct:  110 KDVITAIGSEMKNLVCHVFIGGLPVDEDKKALRKSCHIAVGTPGRVKYLIENHLLKTESVRLFILDEADKLL 181          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: UPI0009E35F65 (probable ATP-dependent RNA helicase DDX20 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E35F65)

HSP 1 Score: 70.9 bits (172), Expect = 1.680e-12
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   14 LGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 79
            +GS + N+     +GG+PV EN K LK  CHIAVGTPGRVK+LI+   L  ES R  +L+ AD L+
Sbjct:  116 IGSQMDNMVCQVFIGGLPVDENKKILKKPCHIAVGTPGRVKYLIENHFLKTESVRLFILDEADKLL 181          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A2B4RW50_STYPI (RNA helicase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RW50_STYPI)

HSP 1 Score: 70.1 bits (170), Expect = 3.150e-12
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    8 QQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 79
            +  +  +GS+I NL     +GG+PV E+ K L+  CHIAVGTPGRVK+LI+   L  E  R  +L+ AD L+
Sbjct:  110 KDVITAIGSEIKNLVCHVFIGGLPVDEDKKVLRKSCHIAVGTPGRVKYLIENHLLKTEFVRLFILDEADKLL 181          
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6P7SEX3_OCTVU (RNA helicase n=6 Tax=Octopus TaxID=6643 RepID=A0A6P7SEX3_OCTVU)

HSP 1 Score: 68.2 bits (165), Expect = 1.510e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    9 QALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 79
            Q +  +GS +  L  AT +GG+ V ++   LK  CHIAVGTPGR+KFLI+KG L  +S R  VL+ AD L+
Sbjct:  113 QVITSIGSCVTGLKCATFIGGLSVTDDKNNLKI-CHIAVGTPGRIKFLIEKGYLRTKSIRLFVLDEADQLL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW2_9PHAE5.990e-2567.12DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRE2_ECTSI1.430e-2362.16DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KMB9_9PHAE3.140e-2166.67DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2H1BUU4_FASHE2.010e-1452.70RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 ... [more]
A0A504ZB09_FASGI2.120e-1452.70RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A... [more]
A0A8E0RSJ7_9TREM2.630e-1352.70RNA helicase n=1 Tax=Fasciolopsis buski TaxID=2784... [more]
A0A3M6V3Y6_POCDA1.230e-1245.83RNA helicase n=1 Tax=Pocillopora damicornis TaxID=... [more]
UPI0009E35F651.680e-1251.52probable ATP-dependent RNA helicase DDX20 isoform ... [more]
A0A2B4RW50_STYPI3.150e-1245.83RNA helicase n=1 Tax=Stylophora pistillata TaxID=5... [more]
A0A6P7SEX3_OCTVU1.510e-1149.30RNA helicase n=6 Tax=Octopus TaxID=6643 RepID=A0A6... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 20..78
e-value: 3.6E-6
score: 26.9
NoneNo IPR availableGENE3D3.40.50.300coord: 6..80
e-value: 8.0E-12
score: 46.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87320contigH-elongata_contig87320:2126..2365 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87320.16273.1mRNA_H-elongata_contig87320.16273.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87320 2126..2365 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87320.16273.1 ID=prot_H-elongata_contig87320.16273.1|Name=mRNA_H-elongata_contig87320.16273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MAGEPTSQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTP
GRVKFLIQKGTLLPESGRTLVLESADWLIA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase