mRNA_H-elongata_contig87320.16273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87320.16273.1
Unique NamemRNA_H-elongata_contig87320.16273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6H5KKW2_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.990e-25
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   25 QALVRLG-SDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 240
            + L+RLG S +PNL +A+LVGG+ VAEN +TL  GCH+A+GTPGRVKFLI KG L+P++GR LVLESADWL+A
Sbjct:    2 ETLLRLGKSSVPNLTIASLVGGIAVAENARTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLVLESADWLMA 74
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BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: D8LRE2_ECTSI (DEAD domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.430e-23
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   22 QQALVRLG-SDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 240
            +  L+RLG + +PNL +A+LVGG+ V+EN +TL  GCH+A+GTPGRVKFLI KG L+ ++GR LVLESADWL+A
Sbjct:  146 KDTLLRLGKTSVPNLTIASLVGGIAVSENAQTLSAGCHVAIGTPGRVKFLIDKGVLVADTGRLLVLESADWLMA 219
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BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6H5KMB9_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.140e-21
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   31 LVRLGSDIPNLAVATLVGGVPVAENNKTLKGG-CHIAVGTPGRVKFLIQKGTL-LPESGRTLVLESADWLIA 240
            L RLG  IP+L+VATL+GGVPV+EN+K L GG C++ VGTPGRVKFLI++GTL +  + RTLVL+SADWL+A
Sbjct:    2 LTRLGEGIPSLSVATLIGGVPVSENHKALAGGGCNVVVGTPGRVKFLIKEGTLRVSAAARTLVLDSADWLMA 73
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A2H1BUU4_FASHE (RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BUU4_FASHE)

HSP 1 Score: 76.3 bits (186), Expect = 2.010e-14
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   19 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 240
            SQ  L RLG+ +P L     VGG+P+A+N K L G CHIAVGTPGR+++LI+ G +  E+ R LVL+ AD L+A
Sbjct:  149 SQNVLERLGTHLPGLKCRLFVGGLPLADNLKHLPG-CHIAVGTPGRIRYLIETGYMTTENIRHLVLDEADLLLA 221
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A504ZB09_FASGI (RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A504ZB09_FASGI)

HSP 1 Score: 76.3 bits (186), Expect = 2.120e-14
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   19 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 240
            SQ  L RLG+ +P L     VGG+P+A+N K L G CHIAVGTPGR+++LI+ G +  E+ R LVL+ AD L+A
Sbjct:  147 SQNVLERLGTHLPGLKCRLFVGGLPLADNLKHLPG-CHIAVGTPGRIRYLIETGYMTTENIRHLVLDEADLLLA 219
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A8E0RSJ7_9TREM (RNA helicase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RSJ7_9TREM)

HSP 1 Score: 73.2 bits (178), Expect = 2.630e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   19 SQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLIA 240
            SQ  L RLG+ +P L     VGG+P+A+N K L+  CHIAVGTPGRV++LI+ G +  E  R LVL+ AD L+A
Sbjct: 1613 SQNVLERLGAHLPGLKCRLFVGGLPLADNLKHLQE-CHIAVGTPGRVRYLIETGYMSTEHIRHLVLDEADLLLA 1685
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A3M6V3Y6_POCDA (RNA helicase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V3Y6_POCDA)

HSP 1 Score: 71.2 bits (173), Expect = 1.230e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   22 QQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 237
            +  +  +GS++ NL     +GG+PV E+ K L+  CHIAVGTPGRVK+LI+   L  ES R  +L+ AD L+
Sbjct:  110 KDVITAIGSEMKNLVCHVFIGGLPVDEDKKALRKSCHIAVGTPGRVKYLIENHLLKTESVRLFILDEADKLL 181
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: UPI0009E35F65 (probable ATP-dependent RNA helicase DDX20 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E35F65)

HSP 1 Score: 70.9 bits (172), Expect = 1.680e-12
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   40 LGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 237
            +GS + N+     +GG+PV EN K LK  CHIAVGTPGRVK+LI+   L  ES R  +L+ AD L+
Sbjct:  116 IGSQMDNMVCQVFIGGLPVDENKKILKKPCHIAVGTPGRVKYLIENHFLKTESVRLFILDEADKLL 181
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A2B4RW50_STYPI (RNA helicase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RW50_STYPI)

HSP 1 Score: 70.1 bits (170), Expect = 3.150e-12
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   22 QQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 237
            +  +  +GS+I NL     +GG+PV E+ K L+  CHIAVGTPGRVK+LI+   L  E  R  +L+ AD L+
Sbjct:  110 KDVITAIGSEIKNLVCHVFIGGLPVDEDKKVLRKSCHIAVGTPGRVKYLIENHLLKTEFVRLFILDEADKLL 181
[Close]
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Match: A0A6P7SEX3_OCTVU (RNA helicase n=6 Tax=Octopus TaxID=6643 RepID=A0A6P7SEX3_OCTVU)

HSP 1 Score: 68.2 bits (165), Expect = 1.510e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   25 QALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTPGRVKFLIQKGTLLPESGRTLVLESADWLI 237
            Q +  +GS +  L  AT +GG+ V ++   LK  CHIAVGTPGR+KFLI+KG L  +S R  VL+ AD L+
Sbjct:  113 QVITSIGSCVTGLKCATFIGGLSVTDDKNNLKI-CHIAVGTPGRIKFLIEKGYLRTKSIRLFVLDEADQLL 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87320.16273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW2_9PHAE5.990e-2567.12DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRE2_ECTSI1.430e-2362.16DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KMB9_9PHAE3.140e-2166.67DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2H1BUU4_FASHE2.010e-1452.70RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 ... [more]
A0A504ZB09_FASGI2.120e-1452.70RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A... [more]
A0A8E0RSJ7_9TREM2.630e-1352.70RNA helicase n=1 Tax=Fasciolopsis buski TaxID=2784... [more]
A0A3M6V3Y6_POCDA1.230e-1245.83RNA helicase n=1 Tax=Pocillopora damicornis TaxID=... [more]
UPI0009E35F651.680e-1251.52probable ATP-dependent RNA helicase DDX20 isoform ... [more]
A0A2B4RW50_STYPI3.150e-1245.83RNA helicase n=1 Tax=Stylophora pistillata TaxID=5... [more]
A0A6P7SEX3_OCTVU1.510e-1149.30RNA helicase n=6 Tax=Octopus TaxID=6643 RepID=A0A6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87320contigH-elongata_contig87320:2126..2365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D8LRE2
KEGG koko:K03257
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
GOsGO:0000027,GO:0000166,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0061668,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1902775
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0327@2759
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-21_002740.1
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931274.1623538-CDS-H-elongata_contig87320:2125..23651622931274.1623538-CDS-H-elongata_contig87320:2125..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87320 2126..2365 -
1691679769.005834-CDS-H-elongata_contig87320:2125..23651691679769.005834-CDS-H-elongata_contig87320:2125..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87320 2126..2365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87320.16273.1prot_H-elongata_contig87320.16273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87320 2126..2365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87320.16273.1

>prot_H-elongata_contig87320.16273.1 ID=prot_H-elongata_contig87320.16273.1|Name=mRNA_H-elongata_contig87320.16273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MAGEPTSQQALVRLGSDIPNLAVATLVGGVPVAENNKTLKGGCHIAVGTP
GRVKFLIQKGTLLPESGRTLVLESADWLIA
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mRNA from alignment at H-elongata_contig87320:2126..2365-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87320.16273.1 ID=mRNA_H-elongata_contig87320.16273.1|Name=mRNA_H-elongata_contig87320.16273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig87320:2126..2365- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGGGAACCAACGTCTCAGCAAGCTCTCGTTCGCCTCGGCAGCGA
CATTCCGAACCTCGCGGTTGCCACCCTCGTCGGAGGCGTTCCTGTGGCGG
AGAACAACAAGACGCTGAAGGGCGGGTGCCACATCGCTGTCGGGACGCCC
GGCCGCGTGAAGTTCCTGATCCAGAAGGGCACTCTGCTGCCGGAATCGGG
GAGGACTTTGGTTCTCGAATCTGCCGACTGGCTTATTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig87320:2126..2365-

>mRNA_H-elongata_contig87320.16273.1 ID=mRNA_H-elongata_contig87320.16273.1|Name=mRNA_H-elongata_contig87320.16273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig87320:2126..2365- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGGGAACCAACGTCTCAGCAAGCTCTCGTTCGCCTCGGCAGCGA
CATTCCGAACCTCGCGGTTGCCACCCTCGTCGGAGGCGTTCCTGTGGCGG
AGAACAACAAGACGCTGAAGGGCGGGTGCCACATCGCTGTCGGGACGCCC
GGCCGCGTGAAGTTCCTGATCCAGAAGGGCACTCTGCTGCCGGAATCGGG
GAGGACTTTGGTTCTCGAATCTGCCGACTGGCTTATTGCGATGGCGGGGG
AACCAACGTCTCAGCAAGCTCTCGTTCGCCTCGGCAGCGACATTCCGAAC
CTCGCGGTTGCCACCCTCGTCGGAGGCGTTCCTGTGGCGGAGAACAACAA
GACGCTGAAGGGCGGGTGCCACATCGCTGTCGGGACGCCCGGCCGCGTGA
AGTTCCTGATCCAGAAGGGCACTCTGCTGCCGGAATCGGGGAGGACTTTG
GTTCTCGAATCTGCCGACTGGCTTATTGCG
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