prot_H-elongata_contig8637.16203.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8637.16203.1
Unique Nameprot_H-elongata_contig8637.16203.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length172
Homology
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.800e-52
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0
Query:   81 LSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            L+ ILCCLCGR IQPNGANMCGACL+DQVDVTEGIPKKGL IIQCRRCLKWLTKND+W+ FELESA FLA++LKKIPG+ KQ++VDAKW+WT
Sbjct:   61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 152          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.480e-48
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0
Query:   81 LSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            L+ ILCCLCGR IQPNGANMCGACL+DQVDVTEGIPKKGL IIQCRRCLKWLTKND+W+ FELESA FLA++LKKIPG+ KQ++VDAKW+WT
Sbjct:   60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 151          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.440e-28
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 0
Query:   78 TKALSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            T  L  ILCCLCG+SIQPN A +CG CL+ +VD+TE I +KGL + QCR+CL+W  KND++   +LES   LA+ LK+IPG+ K ++VDA +VWT
Sbjct:    3 TAHLGAILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQCRKCLRWQGKNDHYVPCQLESLELLALCLKRIPGLSKADIVDAAFVWT 97          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A1X7T227_AMPQE (60S ribosomal export protein NMD3 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T227_AMPQE)

HSP 1 Score: 97.8 bits (242), Expect = 8.180e-22
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   80 ALSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            ++  ILCC CG  I+PN ANMC ACL+ QVD+TEGIPK+  V   CR C ++L     W S  LES   LA+ LKK+ G+ K  +VDA ++WT
Sbjct:   14 SMQRILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTVYF-CRSCERYLQPPSGWVSCSLESRELLALCLKKLKGLGKVHLVDAGFIWT 105          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A1X7V9D4_AMPQE (60S ribosomal export protein NMD3 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V9D4_AMPQE)

HSP 1 Score: 97.4 bits (241), Expect = 1.740e-20
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   80 ALSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            ++  ILCC CG  I+PN ANMC ACL+ QVD+TEGIPK+  +   CR C ++L     W S  LES   LA+ LKK+ G+ K  +VDA ++WT
Sbjct:   14 SMQRILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTIYF-CRSCERYLQPPSGWVSCSLESRELLALCLKKLKGLGKVHLVDAGFIWT 105          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: UPI0014257D39 (60S ribosomal export protein NMD3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257D39)

HSP 1 Score: 96.7 bits (239), Expect = 3.320e-20
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0
Query:   75 GEGTKALSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            GE T+    ILCCLC   I PN ANMC AC++ QVD+TEGIPK+  +   C+ C ++L    +W S  LES   LA+ LKK+ G+ K  ++DA +VWT
Sbjct:    7 GEVTRTEGTILCCLCETPIAPNPANMCVACMRTQVDITEGIPKQATIYF-CKSCERYLQPPSHWVSCTLESRELLALCLKKLKGLQKVTLIDASFVWT 103          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: UPI001EE62663 (60S ribosomal export protein NMD3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE62663)

HSP 1 Score: 96.3 bits (238), Expect = 4.460e-20
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   79 KALSNILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            K+L+ ILCC CG  I+PN  N C ACL+ Q+D+TEGIPK+  V+  CR+C ++L     W S +LES   L++ LK++ G+ K  +VDA ++WT
Sbjct:   10 KSLNTILCCQCGTPIEPNPTNTCVACLRGQIDITEGIPKQA-VLYFCRKCERYLQPPATWISAQLESRELLSVCLKRLKGLAKVNLVDAGFIWT 102          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A8B6GB91_MYTGA (60S ribosomal export protein NMD3 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GB91_MYTGA)

HSP 1 Score: 91.7 bits (226), Expect = 7.170e-20
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   84 ILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQ-EVVDAKWVWT 172
            ILCC CG  I+PN +NMC ACL+ QVD+TEGIPK+G V+  CR C ++L   ++W + +LES   L++ LKK+ G +K   ++DA +VWT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQG-VLYFCRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A8B6GBI4_MYTGA (60S ribosomal export protein NMD3 (Fragment) n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GBI4_MYTGA)

HSP 1 Score: 91.7 bits (226), Expect = 7.820e-20
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   84 ILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQ-EVVDAKWVWT 172
            ILCC CG  I+PN +NMC ACL+ QVD+TEGIPK+G V+  CR C ++L   ++W + +LES   L++ LKK+ G +K   ++DA +VWT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQG-VLYFCRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Match: A0A7M7RCM4_STRPU (60S ribosomal export protein NMD3 n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7RCM4_STRPU)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-19
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   84 ILCCLCGRSIQPNGANMCGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLAMILKKIPGIVKQEVVDAKWVWT 172
            ILCC CG  IQPN ANMC ACL+ QVD+TEGIPK+  V   C+ C ++L     W +  LES   LA+ LKK+ G+ K  ++DA +VWT
Sbjct:   14 ILCCQCGTPIQPNPANMCVACLRTQVDITEGIPKQAAVYF-CKACERYLQPPAQWITCTLESRELLALCLKKLKGLAKVRLIDAGFVWT 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8637.16203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6Y2_9PHAE3.800e-5282.6160S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
D7G1R1_ECTSI2.480e-4882.6160S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A836CPD6_9STRA2.440e-2855.7960S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A1X7T227_AMPQE8.180e-2250.5460S ribosomal export protein NMD3 n=2 Tax=Amphimed... [more]
A0A1X7V9D4_AMPQE1.740e-2049.4660S ribosomal export protein NMD3 n=1 Tax=Amphimed... [more]
UPI0014257D393.320e-2047.9660S ribosomal export protein NMD3-like n=1 Tax=Ann... [more]
UPI001EE626634.460e-2046.8160S ribosomal export protein NMD3-like n=2 Tax=Hal... [more]
A0A8B6GB91_MYTGA7.170e-2050.0060S ribosomal export protein NMD3 n=3 Tax=Mytilus ... [more]
A0A8B6GBI4_MYTGA7.820e-2050.0060S ribosomal export protein NMD3 (Fragment) n=2 T... [more]
A0A7M7RCM4_STRPU1.170e-1951.6960S ribosomal export protein NMD3 n=3 Tax=Echinace... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 86..172
e-value: 3.2E-15
score: 56.3
NoneNo IPR availablePANTHERPTHR12746:SF260S RIBOSOMAL EXPORT PROTEIN NMD3coord: 78..172
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 78..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8637contigH-elongata_contig8637:131..2591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8637.16203.1mRNA_H-elongata_contig8637.16203.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8637 131..6016 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8637.16203.1 ID=prot_H-elongata_contig8637.16203.1|Name=mRNA_H-elongata_contig8637.16203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
MLGFDETSEATWEEKRRRSSNTEMATVASATTRAAKAATSAGAEDPEEPA
DGASTDIDGRRTGGGVGGDTAKAGGEGTKALSNILCCLCGRSIQPNGANM
CGACLKDQVDVTEGIPKKGLVIIQCRRCLKWLTKNDNWNSFELESALFLA
MILKKIPGIVKQEVVDAKWVWT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3