prot_H-elongata_contig83643.15990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83643.15990.1
Unique Nameprot_H-elongata_contig83643.15990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length257
Homology
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BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.830e-81
Identity = 161/257 (62.65%), Postives = 193/257 (75.10%), Query Frame = 0 
Query:    1 QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSLLGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNCLAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKDKASATK---TMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTARMFGDGLEEGKAGGKGGARERGRGEAVVERVVRLHATLGDVAAAKELAQKRGLKI 254
            QLVEKVALP VAE LSTAYDAMSR+QTACL + VSE+L+Y+P+E +LK+LLGSA+ AL+A V+ +C+P+IGAS TP   AAA+ LVR+QA +GLKLLRNCLAWRDLLSPESLVP+ALGDL+AKRLVPAL  L    G R            ++  K    MG   G +EALALCERAVELLPL+W ERT+ASA LA++++TAR+FGDGL  G   G GG + R    A VERVVRL   LGD  AAK+LAQ+ GLKI
Sbjct:  740 QLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILIYDPTEESLKTLLGSAMRALQAAVQGVCIPLIGASSTPGGRAAAVRLVRIQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLVPALREL----GARGNASGTAAGISNSAGHKGAAAMG--AGWSEALALCERAVELLPLDWMERTNASAPLASVRITARLFGDGLGSG---GVGGGKGRAAAVAAVERVVRLQVALGDDTAAKDLAQRFGLKI 987
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BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Match: A0A835YVY7_9STRA (GCFC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.190e-6
Identity = 59/220 (26.82%), Postives = 89/220 (40.45%), Query Frame = 0 
Query:    1 QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSLLGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNCLAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKDKASATKTMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTARMFGDGLEEGKAGGKGGARER 220
            +L+E  A+P++A  + +AYDA S   TA L A                      L  L      LCVP++G      A    + L   +     +L  N  AW  + +  +LVP+A+G++ A+R  PAL  L+  R P             A+A + +         + + ER   L P+ W      + A+  L   A M  D L  G AG +  A ER
Sbjct:  817 KLLEAAAVPQLAAAIESAYDAGSAAATAHLVAXXXXXXXXXXXXXXXXXXXXXPLPPLXXXXXALCVPVVGPL---AARGGGVALAARRLWHAARLYHNAAAWDGVAAAAALVPIAIGEVAARRAAPALERLLRGRAP------------PAAAVRAV---------VPVIERFAALTPVAWRSCPGYADAVRPLLEAAAMANDALA-GPAGAEESAEER 1011
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUF7_9PHAE2.830e-8162.65GCFC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YVY7_9STRA2.190e-626.82GCFC domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12214:SF0GC-RICH SEQUENCE DNA-BINDING FACTOR-LIKE PROTEINcoord: 1..213
IPR012890GC-rich sequence DNA-binding factorPANTHERPTHR12214GC-RICH SEQUENCE DNA-BINDING FACTORcoord: 1..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83643contigH-elongata_contig83643:881..2637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83643.15990.1mRNA_H-elongata_contig83643.15990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83643 881..2637 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83643.15990.1 ID=prot_H-elongata_contig83643.15990.1|Name=mRNA_H-elongata_contig83643.15990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSL
LGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNC
LAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKD
KASATKTMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTAR
MFGDGLEEGKAGGKGGARERGRGEAVVERVVRLHATLGDVAAAKELAQKR
GLKIVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012890GCFC