mRNA_H-elongata_contig83643.15990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig83643.15990.1
Unique Name	mRNA_H-elongata_contig83643.15990.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.830e-81
Identity = 161/257 (62.65%), Postives = 193/257 (75.10%), Query Frame = 1

Query:    1 QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSLLGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNCLAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKDKASATK---TMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTARMFGDGLEEGKAGGKGGARERGRGEAVVERVVRLHATLGDVAAAKELAQKRGLKI 762
            QLVEKVALP VAE LSTAYDAMSR+QTACL + VSE+L+Y+P+E +LK+LLGSA+ AL+A V+ +C+P+IGAS TP   AAA+ LVR+QA +GLKLLRNCLAWRDLLSPESLVP+ALGDL+AKRLVPAL  L    G R            ++  K    MG   G +EALALCERAVELLPL+W ERT+ASA LA++++TAR+FGDGL  G   G GG + R    A VERVVRL   LGD  AAK+LAQ+ GLKI
Sbjct:  740 QLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILIYDPTEESLKTLLGSAMRALQAAVQGVCIPLIGASSTPGGRAAAVRLVRIQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLVPALREL----GARGNASGTAAGISNSAGHKGAAAMG--AGWSEALALCERAVELLPLDWMERTNASAPLASVRITARLFGDGLGSG---GVGGGKGRAAAVAAVERVVRLQVALGDDTAAKDLAQRFGLKI 987

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BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Match: A0A835YVY7_9STRA (GCFC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.190e-6
Identity = 59/220 (26.82%), Postives = 89/220 (40.45%), Query Frame = 1

Query:    1 QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSLLGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNCLAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKDKASATKTMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTARMFGDGLEEGKAGGKGGARER 660
            +L+E  A+P++A  + +AYDA S   TA L A                      L  L      LCVP++G      A    + L   +     +L  N  AW  + +  +LVP+A+G++ A+R  PAL  L+  R P             A+A + +         + + ER   L P+ W      + A+  L   A M  D L  G AG +  A ER
Sbjct:  817 KLLEAAAVPQLAAAIESAYDAGSAAATAHLVAXXXXXXXXXXXXXXXXXXXXXPLPPLXXXXXALCVPVVGPL---AARGGGVALAARRLWHAARLYHNAAAWDGVAAAAALVPIAIGEVAARRAAPALERLLRGRAP------------PAAAVRAV---------VPVIERFAALTPVAWRSCPGYADAVRPLLEAAAMANDALA-GPAGAEESAEER 1011

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot

BLAST of mRNA_H-elongata_contig83643.15990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JUF7_9PHAE	2.830e-81	62.65	GCFC domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A835YVY7_9STRA	2.190e-6	26.82	GCFC domain-containing protein n=1 Tax=Tribonema m...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig83643	contig	H-elongata_contig83643:881..2637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	275.0
Seed ortholog evalue	3.5e-71
Seed eggNOG ortholog	2880.D8LAU3
Preferred name	PAXBP1
KEGG ko	ko:K09061,ko:K13211,ko:K17536,ko:K20476
KEGG Pathway	ko04013,map04013
GOs	GO:0000122,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0007049,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0014842,GO:0014857,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030371,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042023,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0045182,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071008,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990837,GO:1990904,GO:2000112,GO:2000113,GO:2000288,GO:2000291,GO:2001141,GO:2001252
EggNOG free text desc.	RNA polymerase II proximal promoter sequence-specific DNA binding
EggNOG OGs	KOG2136@1,KOG2136@2759
COG Functional cat.	EGP
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01001,ko03000,ko03041,ko04131
Hectar predicted targeting category	other localisation
Exons	2
Model size	771
Cds size	771
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931242.386941-CDS-H-elongata_contig83643:880..1474	1622931242.386941-CDS-H-elongata_contig83643:880..1474	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig83643 881..1474 -
1691679756.4200294-CDS-H-elongata_contig83643:880..1474	1691679756.4200294-CDS-H-elongata_contig83643:880..1474	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig83643 881..1474 -
1622931242.4065874-CDS-H-elongata_contig83643:2460..2637	1622931242.4065874-CDS-H-elongata_contig83643:2460..2637	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig83643 2461..2637 -
1691679756.4325235-CDS-H-elongata_contig83643:2460..2637	1691679756.4325235-CDS-H-elongata_contig83643:2460..2637	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig83643 2461..2637 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig83643.15990.1	prot_H-elongata_contig83643.15990.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig83643 881..2637 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig83643:881..2637-
coding sequence from alignment at H-elongata_contig83643:881..2637-

protein sequence of mRNA_H-elongata_contig83643.15990.1

>prot_H-elongata_contig83643.15990.1 ID=prot_H-elongata_contig83643.15990.1|Name=mRNA_H-elongata_contig83643.15990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
QLVEKVALPRVAECLSTAYDAMSRKQTACLTATVSELLVYEPSEAALKSL
LGSALEALKATVKTLCVPIIGASPTPEASAAAITLVRVQACKGLKLLRNC
LAWRDLLSPESLVPVALGDLLAKRLVPALHGLVEDRGPRDKEQHAKKTKD
KASATKTMGNERGPAEALALCERAVELLPLEWTERTDASAALAALKVTAR
MFGDGLEEGKAGGKGGARERGRGEAVVERVVRLHATLGDVAAAKELAQKR
GLKIVE*

mRNA from alignment at H-elongata_contig83643:881..2637-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig83643.15990.1 ID=mRNA_H-elongata_contig83643.15990.1|Name=mRNA_H-elongata_contig83643.15990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1757bp|location=Sequence derived from alignment at H-elongata_contig83643:881..2637- (Himanthalia elongata Himel1 dioecious)
CAGCTCGTGGAGAAAGTGGCGTTGCCCCGGGTGGCGGAATGCCTATCCAC
GGCCTACGACGCAATGTCGAGGAAGCAGACAGCCTGTCTCACGGCGACTG
TTTCCGAGCTTCTGGTTTACGAGCCTTCCGAGGCTGCCCTGAAAAGCCTA
CTGGGATCGGCGCTCGAGGCCTTGAAGGTGGGAACACTAGAGAAAAGGGG
GCGTTTTTCCGATTGGCCGTTGGCGATAGATCGTGGAAGAAACCATGCTT
CCTTCCTTCGTCTTTAGATCGGTCTAACGCCACAGCTGAGGCGTGCACAA
CTTTATTACCCCCCCCCTCCCCCCTCCTCTTCCCCCTTCCCCTCTCTTTT
ACCGCTATTTTCTAGGAAATCCTAGTATTATCTTCTCTTCTTTCCCGGTG
GGATGTGGTGGCTGTTCTCGTATTATGTGTATATGGTCTAAGATTCCAAC
CCCGCGTGTTGTACTATACTAAATAGTATACGCTGAAAAGAAATATTTTT
GTTGTGTAAAAATAACATAAATACAGTATATGGATTGGGTTTTGTTTTTT
ATTAAAAAGCATATGAACCCATTCAAACCCTCCGAATATTCATGCCTTCT
TAGCACCGTGAGAGGTGCAGTCCAGGCGATCAACTATCGGGGATGCAGCA
TCAAACAATCGACGCACAATAGTTCGTCCGCGTCTTTTTTTGGGGGGGAG
GGTTAGTCTCTTCTTGATTCGTAATGTTTTTTAAAGAGCTTGACTCGCCT
CTGCGATACTCGTACGCGTTTCTCTGTTTTATGCCTAAATATATGTCTAT
TACTAGTATTGTTGTTGTGACAGTGCCACATTTTGTCAGGTTCTTGGCTT
CTGTTTTGTTTCCGTGGGAAGGCTCAAGGTTCAGCGCACAAAACGAACAT
TATACGGTACCAATACGCTGTACTGTACGGTACGGTACAGTTATACGGTA
CGGTACGGTACAATTATAAGGTACAACTATAAGGTACGGTATGGTACAGT
TCAGAGCTCTCTTGCACGAAACGTTTTTTTTCTGGTGCCGCCACCCCCGC
CGTCGAGATCCGAAAATCGTAGGCCGAACGAACTCTGGCTGTGAAGAGAG
AATACGAACTGAAGACTTCCCCGCTCCTTCGATGTAATCCCCCCCTCTCC
CCAAACACGCAAGGCGACGGTGAAAACCCTGTGCGTCCCGATCATCGGAG
CGTCCCCAACTCCCGAGGCGAGCGCCGCCGCGATCACCCTTGTCCGCGTG
CAGGCCTGCAAGGGGCTCAAGCTGCTGAGAAACTGTTTGGCGTGGCGAGA
CCTTCTCTCCCCTGAATCCCTCGTACCCGTAGCGCTTGGAGACCTGCTCG
CTAAGCGGCTCGTCCCCGCGCTGCATGGCCTGGTGGAGGACCGTGGTCCG
AGGGACAAGGAACAACACGCCAAGAAGACCAAGGACAAGGCCTCGGCTAC
TAAAACCATGGGGAATGAGAGAGGACCGGCGGAGGCGCTTGCGTTGTGTG
AGCGTGCGGTGGAATTGTTGCCTCTCGAGTGGACTGAAAGGACCGACGCC
TCGGCGGCCTTGGCGGCCCTGAAGGTCACAGCACGGATGTTCGGGGACGG
ATTGGAGGAGGGGAAGGCGGGCGGTAAGGGAGGAGCGCGAGAACGAGGGC
GTGGGGAAGCGGTGGTGGAACGCGTGGTGAGGCTGCACGCAACGCTAGGA
GACGTGGCCGCAGCGAAGGAGCTAGCTCAGAAGCGCGGGCTGAAGATTGT
TGAATGA

Coding sequence (CDS) from alignment at H-elongata_contig83643:881..2637-

>mRNA_H-elongata_contig83643.15990.1 ID=mRNA_H-elongata_contig83643.15990.1|Name=mRNA_H-elongata_contig83643.15990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig83643:881..2637- (Himanthalia elongata Himel1 dioecious)
CAGCTCGTGGAGAAAGTGGCGTTGCCCCGGGTGGCGGAATGCCTATCCAC
GGCCTACGACGCAATGTCGAGGAAGCAGACAGCCTGTCTCACGGCGACTG
TTTCCGAGCTTCTGGTTTACGAGCCTTCCGAGGCTGCCCTGAAAAGCCTA
CTGGGATCGGCGCTCGAGGCCTTGAAGCAGCTCGTGGAGAAAGTGGCGTT
GCCCCGGGTGGCGGAATGCCTATCCACGGCCTACGACGCAATGTCGAGGA
AGCAGACAGCCTGTCTCACGGCGACTGTTTCCGAGCTTCTGGTTTACGAG
CCTTCCGAGGCTGCCCTGAAAAGCCTACTGGGATCGGCGCTCGAGGCCTT
GAAGGCGACGGTGAAAACCCTGTGCGTCCCGATCATCGGAGCGTCCCCAA
CTCCCGAGGCGAGCGCCGCCGCGATCACCCTTGTCCGCGTGCAGGCCTGC
AAGGGGCTCAAGCTGCTGAGAAACTGTTTGGCGTGGCGAGACCTTCTCTC
CCCTGAATCCCTCGTACCCGTAGCGCTTGGAGACCTGCTCGCTAAGCGGC
TCGTCCCCGCGCTGCATGGCCTGGTGGAGGACCGTGGTCCGAGGGACAAG
GAACAACACGCCAAGAAGACCAAGGACAAGGCCTCGGCTACTAAAACCAT
GGGGAATGAGAGAGGACCGGCGGAGGCGCTTGCGTTGTGTGAGCGTGCGG
TGGAATTGTTGCCTCTCGAGTGGACTGAAAGGACCGACGCCTCGGCGGCC
TTGGCGGCCCTGAAGGTCACAGCACGGATGTTCGGGGACGGATTGGAGGA
GGGGAAGGCGGGCGGTAAGGGAGGAGCGCGAGAACGAGGGCGTGGGGAAG
CGGTGGTGGAACGCGTGGTGAGGCTGCACGCAACGCTAGGAGACGTGGCC
GCAGCGAAGGAGCTAGCTCAGAAGCGCGGGCTGAAGATTGTTGAATGAGC
GACGGTGAAAACCCTGTGCGTCCCGATCATCGGAGCGTCCCCAACTCCCG
AGGCGAGCGCCGCCGCGATCACCCTTGTCCGCGTGCAGGCCTGCAAGGGG
CTCAAGCTGCTGAGAAACTGTTTGGCGTGGCGAGACCTTCTCTCCCCTGA
ATCCCTCGTACCCGTAGCGCTTGGAGACCTGCTCGCTAAGCGGCTCGTCC
CCGCGCTGCATGGCCTGGTGGAGGACCGTGGTCCGAGGGACAAGGAACAA
CACGCCAAGAAGACCAAGGACAAGGCCTCGGCTACTAAAACCATGGGGAA
TGAGAGAGGACCGGCGGAGGCGCTTGCGTTGTGTGAGCGTGCGGTGGAAT
TGTTGCCTCTCGAGTGGACTGAAAGGACCGACGCCTCGGCGGCCTTGGCG
GCCCTGAAGGTCACAGCACGGATGTTCGGGGACGGATTGGAGGAGGGGAA
GGCGGGCGGTAAGGGAGGAGCGCGAGAACGAGGGCGTGGGGAAGCGGTGG
TGGAACGCGTGGTGAGGCTGCACGCAACGCTAGGAGACGTGGCCGCAGCG
AAGGAGCTAGCTCAGAAGCGCGGGCTGAAGATTGTTGAATGA