prot_H-elongata_contig82203.15878.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82203.15878.1
Unique Nameprot_H-elongata_contig82203.15878.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length310
Homology
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BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Match: D7FN35_ECTSI (Chorein N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN35_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 4.930e-77
Identity = 143/242 (59.09%), Postives = 175/242 (72.31%), Query Frame = 0 
Query:    1 RLIPWNTRTPTNSPFSQVRPPKAAKDGSPGGILPSVETWSWSAEMERAVTGGSIKGRPRSVSNAVLRGGFKKEGGAWARAMWRFAGACVRHDVRSGLTRKLPATLPLWDGTISPSDSVTSAIGEGVIPAEGRGTETEAGHDFPSSS-SWRVTYLRLHARTLMSREAKNIAP-----RVPDVRRMGVPRGREPLSLAEMWEMARVEAFAPGDEVVFLRSAARISSHFEWGRVRRARLSAKAAA 236
            R IP       N P  +V PPK AKDG+P G+LPSVETWSW++EM     G +  GRP+S + AVL GGF KEGG+WARAMWRFAGACVRHD+R  LT+KLPA+LP W+G IS   S +    + V      G    AG D  S+S SWRV YLRLHARTL++R+AKN+       R  DVRR+GVP+GREPLSL EMW++A+VE+FAPGDEVVFLR+AA+ISSH+EW R R+AR +AK+AA
Sbjct:  430 RFIPQAYLPLRNLPPPKVHPPKPAKDGAPAGMLPSVETWSWASEMG----GKTGVGRPKSAAEAVLVGGFAKEGGSWARAMWRFAGACVRHDIRLALTKKLPASLPNWNGAISADPSPSPGHPDVVAKPATNGVPP-AGMDPASASLSWRVAYLRLHARTLLARDAKNLGSSSGGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLRTAAKISSHYEWNRARKARAAAKSAA 666
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BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Match: A0A6H5KF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF13_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.380e-12
Identity = 50/108 (46.30%), Postives = 61/108 (56.48%), Query Frame = 0 
Query:  174 DVRRMGVPRGREPLSLAEMWEMARVEAFAPGDEVVFLRSAARISSHFEWGRVRRAR-LSAKAAAEXXXXXXXXXXXXXXXXXVATAWTTRDDALVLAKLDALRSRRFA 280
            DVR++GVP+GREPLSL EMW++A+VE+FAPGDEVVFLR           G  R A  L+   AA                   A AWT +DDA +L  LD LR+ R A
Sbjct:   19 DVRKLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLRKR---------GPARPAPPLNPPXAA-------------------AAAWTVKDDAALLRSLDELRASRVA 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN35_ECTSI4.930e-7759.09Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6H5KF13_9PHAE5.380e-1246.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82203contigH-elongata_contig82203:463..2332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82203.15878.1mRNA_H-elongata_contig82203.15878.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82203 463..2332 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82203.15878.1 ID=prot_H-elongata_contig82203.15878.1|Name=mRNA_H-elongata_contig82203.15878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
RLIPWNTRTPTNSPFSQVRPPKAAKDGSPGGILPSVETWSWSAEMERAVT
GGSIKGRPRSVSNAVLRGGFKKEGGAWARAMWRFAGACVRHDVRSGLTRK
LPATLPLWDGTISPSDSVTSAIGEGVIPAEGRGTETEAGHDFPSSSSWRV
TYLRLHARTLMSREAKNIAPRVPDVRRMGVPRGREPLSLAEMWEMARVEA
FAPGDEVVFLRSAARISSHFEWGRVRRARLSAKAAAEKKGASSEVAAAAG
AAAAVATAWTTRDDALVLAKLDALRSRRFAVALVEKAKAKAGAAAGTGAA
SEDEDDDEEE
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