mRNA_H-elongata_contig82203.15878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82203.15878.1
Unique NamemRNA_H-elongata_contig82203.15878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Match: D7FN35_ECTSI (Chorein N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN35_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 4.930e-77
Identity = 143/242 (59.09%), Postives = 175/242 (72.31%), Query Frame = 1 
Query:    1 RLIPWNTRTPTNSPFSQVRPPKAAKDGSPGGILPSVETWSWSAEMERAVTGGSIKGRPRSVSNAVLRGGFKKEGGAWARAMWRFAGACVRHDVRSGLTRKLPATLPLWDGTISPSDSVTSAIGEGVIPAEGRGTETEAGHDFPSSS-SWRVTYLRLHARTLMSREAKNIAP-----RVPDVRRMGVPRGREPLSLAEMWEMARVEAFAPGDEVVFLRSAARISSHFEWGRVRRARLSAKAAA 708
            R IP       N P  +V PPK AKDG+P G+LPSVETWSW++EM     G +  GRP+S + AVL GGF KEGG+WARAMWRFAGACVRHD+R  LT+KLPA+LP W+G IS   S +    + V      G    AG D  S+S SWRV YLRLHARTL++R+AKN+       R  DVRR+GVP+GREPLSL EMW++A+VE+FAPGDEVVFLR+AA+ISSH+EW R R+AR +AK+AA
Sbjct:  430 RFIPQAYLPLRNLPPPKVHPPKPAKDGAPAGMLPSVETWSWASEMG----GKTGVGRPKSAAEAVLVGGFAKEGGSWARAMWRFAGACVRHDIRLALTKKLPASLPNWNGAISADPSPSPGHPDVVAKPATNGVPP-AGMDPASASLSWRVAYLRLHARTLLARDAKNLGSSSGGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLRTAAKISSHYEWNRARKARAAAKSAA 666
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BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Match: A0A6H5KF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF13_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.380e-12
Identity = 50/108 (46.30%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:  520 DVRRMGVPRGREPLSLAEMWEMARVEAFAPGDEVVFLRSAARISSHFEWGRVRRAR-LSAKAAAEXXXXXXXXXXXXXXXXXVATAWTTRDDALVLAKLDALRSRRFA 840
            DVR++GVP+GREPLSL EMW++A+VE+FAPGDEVVFLR           G  R A  L+   AA                   A AWT +DDA +L  LD LR+ R A
Sbjct:   19 DVRKLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLRKR---------GPARPAPPLNPPXAA-------------------AAAWTVKDDAALLRSLDELRASRVA 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82203.15878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN35_ECTSI4.930e-7759.09Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6H5KF13_9PHAE5.380e-1246.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82203contigH-elongata_contig82203:463..2332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size930
Cds size930
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82203.15878.1prot_H-elongata_contig82203.15878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82203 463..2332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.0090163-CDS-H-elongata_contig82203:462..7601622931229.0090163-CDS-H-elongata_contig82203:462..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 463..760 -
1691679750.864289-CDS-H-elongata_contig82203:462..7601691679750.864289-CDS-H-elongata_contig82203:462..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 463..760 -
1622931229.0245178-CDS-H-elongata_contig82203:1269..16201622931229.0245178-CDS-H-elongata_contig82203:1269..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 1270..1620 -
1691679750.8832645-CDS-H-elongata_contig82203:1269..16201691679750.8832645-CDS-H-elongata_contig82203:1269..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 1270..1620 -
1622931229.0445983-CDS-H-elongata_contig82203:2051..23321622931229.0445983-CDS-H-elongata_contig82203:2051..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 2052..2332 -
1691679750.903108-CDS-H-elongata_contig82203:2051..23321691679750.903108-CDS-H-elongata_contig82203:2051..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82203 2052..2332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82203.15878.1

>prot_H-elongata_contig82203.15878.1 ID=prot_H-elongata_contig82203.15878.1|Name=mRNA_H-elongata_contig82203.15878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
RLIPWNTRTPTNSPFSQVRPPKAAKDGSPGGILPSVETWSWSAEMERAVT
GGSIKGRPRSVSNAVLRGGFKKEGGAWARAMWRFAGACVRHDVRSGLTRK
LPATLPLWDGTISPSDSVTSAIGEGVIPAEGRGTETEAGHDFPSSSSWRV
TYLRLHARTLMSREAKNIAPRVPDVRRMGVPRGREPLSLAEMWEMARVEA
FAPGDEVVFLRSAARISSHFEWGRVRRARLSAKAAAEKKGASSEVAAAAG
AAAAVATAWTTRDDALVLAKLDALRSRRFAVALVEKAKAKAGAAAGTGAA
SEDEDDDEEE
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mRNA from alignment at H-elongata_contig82203:463..2332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82203.15878.1 ID=mRNA_H-elongata_contig82203.15878.1|Name=mRNA_H-elongata_contig82203.15878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1870bp|location=Sequence derived from alignment at H-elongata_contig82203:463..2332- (Himanthalia elongata Himel1 dioecious)
CGCCTTATCCCATGGAACACCCGGACACCCACCAACTCACCTTTTTCTCA
GGTCCGGCCGCCTAAGGCTGCCAAGGATGGCTCCCCTGGCGGTATCCTCC
CATCCGTGGAAACATGGAGCTGGAGCGCGGAGATGGAAAGAGCGGTCACG
GGGGGATCCATCAAGGGTAGGCCGCGATCGGTGTCAAATGCGGTTCTTAG
GGGAGGGTTCAAGAAGGAAGGAGGCGCCTGGGCTCGTGCGATGTGGAGGT
TTGCGGGGGCTTGCGTCCGGCACGACGTTCGGTGAGCCAAAAGAGGGGCG
AGCGGGTGGGATTTTTAATGGTTTTGTTTATATTTTTGTTTTTTGTTTTT
GTTTATATTGGTATTGGCGGAATGCATTTTGCGACCGTCTGTGAGTGTGT
GTATGTATTTGTGTGTGAGAGAGAGTTTGTGAAGACAAGCTCCAGGGGGG
CATTATAGCAGTTGAGGTAACTTTCTCTCATTCGTCTTTGTAATATAATA
ATCGAGAGGTTAAGGAATTAGTTCTATGAATTGTTTTGAAAAAATAGAGT
TTTTCACCTTTTACCAGAGAACATGCTTCGCTTGGTTTAATGACCGTGCC
ATGGAACACTTAAAAAATGCAAATAAACCACGTTTTCGACGAGAAAAACA
GCAATAACCGAAACGCCTCCCTTCCCTCTGAACACCGCCGCTGTGTTGCT
GTTGATCTAAAGTTCGGGGTTGACCCGAAAGCTCCCCGCAACGCTTCCGC
TGTGGGACGGGACCATCTCGCCGTCTGACTCCGTCACTTCTGCTATTGGA
GAAGGCGTTATCCCCGCCGAGGGACGAGGAACGGAGACAGAGGCAGGACA
CGATTTTCCCTCGTCGTCGTCGTGGCGAGTCACGTACCTGAGGCTGCACG
CAAGGACACTCATGTCGCGAGAGGCAAAGAACATAGCTCCGCGGGTGCCC
GATGTGCGGAGGATGGGGGTTCCGAGAGGGAGGGAGCCGCTGTCGCTGGC
GGAGATGTGGGAGATGGCGCGGGTGGAGGCATTCGCGCCTGGTGACGAGG
TGGTTTTCTTGAGGTGCGATGCGTGTTCGTTCGTCTCTGTGCGTCTTGGT
TGTGTTTGTTGTCTTTGCGTGTCGGTTGTTTCTCCGCGCACACTTGGTGC
GTTTCCTTAACGGATCCAGGAAGATATATCCGCGTCTGGTCCCGAGGTGG
TAAATTTTTATTTTGAATTTTACGTTACGTTTCGTCTGGTTTGTTTCGTT
TCGGACGTGAGTTGCGGAGCGAAGAGCGTGAAAATGTACACAGGTCGATC
GTTCGTCTGTGCCATAATTTTGAAGCCATAATTTTCCTGACTTTGGAAAG
ATTGCCGGTATTATTATTATTTTTATTATTATTATTATTATTATTATTAT
TATTTATTTATTTTCCATTAGTGTGTCCGGTGTGTGCGTGTCGTGGTTTT
CATAAAAGTCTGATGGCGTTACAAATATCGATTCATGCGTTCGCCCCCTT
TATGTAGGGTTTAATGCAGCGTGACCACTATAATGACTACACTTTCAAAT
TCAACCTTAAACCGTTCGACAGATCCGCCGCCAGGATCTCGTCGCACTTT
GAATGGGGCCGCGTGCGCCGTGCCCGCCTTTCTGCTAAGGCCGCAGCCGA
AAAGAAAGGGGCTTCGTCGGAGGTGGCGGCGGCAGCGGGGGCTGCGGCCG
CGGTGGCGACGGCGTGGACGACGAGGGACGACGCCTTGGTCTTGGCGAAG
CTAGATGCGCTCAGGTCGAGGCGTTTTGCCGTTGCTCTGGTGGAAAAGGC
AAAGGCCAAGGCGGGGGCCGCGGCGGGGACGGGGGCAGCCAGCGAGGATG
AAGACGACGACGAGGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig82203:463..2332-

>mRNA_H-elongata_contig82203.15878.1 ID=mRNA_H-elongata_contig82203.15878.1|Name=mRNA_H-elongata_contig82203.15878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1860bp|location=Sequence derived from alignment at H-elongata_contig82203:463..2332- (Himanthalia elongata Himel1 dioecious)
CGCCTTATCCCATGGAACACCCGGACACCCACCAACTCACCTTTTTCTCA
GGTCCGGCCGCCTAAGGCTGCCAAGGATGGCTCCCCTGGCGGTATCCTCC
CATCCGTGGAAACATGGAGCTGGAGCGCGGAGATGGAAAGAGCGGTCACG
GGGGGATCCATCAAGGGTAGGCCGCGATCGGTGTCAAATGCGGTTCTTAG
GGGAGGGTTCAAGAAGGAAGGAGGCGCCTGGGCTCGTGCGATGTGGAGGT
TTGCGGGGGCTTGCGTCCGGCACGACGTTCGCGCCTTATCCCATGGAACA
CCCGGACACCCACCAACTCACCTTTTTCTCAGGTCCGGCCGCCTAAGGCT
GCCAAGGATGGCTCCCCTGGCGGTATCCTCCCATCCGTGGAAACATGGAG
CTGGAGCGCGGAGATGGAAAGAGCGGTCACGGGGGGATCCATCAAGGGTA
GGCCGCGATCGGTGTCAAATGCGGTTCTTAGGGGAGGGTTCAAGAAGGAA
GGAGGCGCCTGGGCTCGTGCGATGTGGAGGTTTGCGGGGGCTTGCGTCCG
GCACGACGTTCGTTCGGGGTTGACCCGAAAGCTCCCCGCAACGCTTCCGC
TGTGGGACGGGACCATCTCGCCGTCTGACTCCGTCACTTCTGCTATTGGA
GAAGGCGTTATCCCCGCCGAGGGACGAGGAACGGAGACAGAGGCAGGACA
CGATTTTCCCTCGTCGTCGTCGTGGCGAGTCACGTACCTGAGGCTGCACG
CAAGGACACTCATGTCGCGAGAGGCAAAGAACATAGCTCCGCGGGTGCCC
GATGTGCGGAGGATGGGGGTTCCGAGAGGGAGGGAGCCGCTGTCGCTGGC
GGAGATGTGGGAGATGGCGCGGGTGGAGGCATTCGCGCCTGGTGACGAGG
TGGTTTTCTTGAGTTCGGGGTTGACCCGAAAGCTCCCCGCAACGCTTCCG
CTGTGGGACGGGACCATCTCGCCGTCTGACTCCGTCACTTCTGCTATTGG
AGAAGGCGTTATCCCCGCCGAGGGACGAGGAACGGAGACAGAGGCAGGAC
ACGATTTTCCCTCGTCGTCGTCGTGGCGAGTCACGTACCTGAGGCTGCAC
GCAAGGACACTCATGTCGCGAGAGGCAAAGAACATAGCTCCGCGGGTGCC
CGATGTGCGGAGGATGGGGGTTCCGAGAGGGAGGGAGCCGCTGTCGCTGG
CGGAGATGTGGGAGATGGCGCGGGTGGAGGCATTCGCGCCTGGTGACGAG
GTGGTTTTCTTGAGATCCGCCGCCAGGATCTCGTCGCACTTTGAATGGGG
CCGCGTGCGCCGTGCCCGCCTTTCTGCTAAGGCCGCAGCCGAAAAGAAAG
GGGCTTCGTCGGAGGTGGCGGCGGCAGCGGGGGCTGCGGCCGCGGTGGCG
ACGGCGTGGACGACGAGGGACGACGCCTTGGTCTTGGCGAAGCTAGATGC
GCTCAGGTCGAGGCGTTTTGCCGTTGCTCTGGTGGAAAAGGCAAAGGCCA
AGGCGGGGGCCGCGGCGGGGACGGGGGCAGCCAGCGAGGATGAAGACGAC
GACGAGGAGGAGATCCGCCGCCAGGATCTCGTCGCACTTTGAATGGGGCC
GCGTGCGCCGTGCCCGCCTTTCTGCTAAGGCCGCAGCCGAAAAGAAAGGG
GCTTCGTCGGAGGTGGCGGCGGCAGCGGGGGCTGCGGCCGCGGTGGCGAC
GGCGTGGACGACGAGGGACGACGCCTTGGTCTTGGCGAAGCTAGATGCGC
TCAGGTCGAGGCGTTTTGCCGTTGCTCTGGTGGAAAAGGCAAAGGCCAAG
GCGGGGGCCGCGGCGGGGACGGGGGCAGCCAGCGAGGATGAAGACGACGA
CGAGGAGGAG
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