prot_H-elongata_contig80902.15747.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80902.15747.1
Unique Nameprot_H-elongata_contig80902.15747.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A5N6PGN7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGN7_9ASTR)

HSP 1 Score: 52.8 bits (125), Expect = 1.990e-6
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRK--QVGLLKKAMYGLVHAGLLW 62
            VLSM    GW  RQLDV  A+L  D++E +Y+  P  + DP K   V LL K++YGL  A   W
Sbjct:  243 VLSMAVTHGWPLRQLDVQNAFLNGDLQETVYLRQPPGFVDPAKPNHVCLLHKSLYGLKQAPRAW 306          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: UPI000A2B6A5C (uncharacterized protein LOC107627359 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B6A5C)

HSP 1 Score: 52.4 bits (124), Expect = 2.740e-6
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 0
Query:    1 MVLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW 62
            ++L+++AA GWE  QLDV+  +L  +++E+Y+  P     P   V  L K++YGL  A   W
Sbjct:  502 LLLTLVAAKGWELHQLDVNTTFLHGELQEVYMLPPQGLVVPNSAVCRLDKSLYGLKQASRQW 563          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A803QDY6_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QDY6_CANSA)

HSP 1 Score: 50.4 bits (119), Expect = 1.300e-5
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPR--KQVGLLKKAMYGLVHAGLLW 62
            VL++  + GW+ RQLDV+ A+L  D+ EEIY+  P  + DP    +V  L KA+YGL  A   W
Sbjct:  114 VLTIALSKGWDVRQLDVNNAFLNGDLQEEIYMVQPPGFVDPEHPNKVCKLHKAIYGLKQAPRAW 177          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9GUB1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GUB1_FAGSY)

HSP 1 Score: 50.1 bits (118), Expect = 1.770e-5
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAG 59
            +L++ A   W   Q+DV  A+L  D+ EE+Y++ P  Y D + QV  L++A+YGL HAG
Sbjct:  127 LLAVAAVRHWPLFQMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCHLRRALYGLKHAG 185          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 49.7 bits (117), Expect = 2.470e-5
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPR--KQVGLLKKAMYGLVHAGLLW 62
            +L++  A  WE  Q+DV  A+L+ ++EEIY+  PD Y +      V  LKK++YGL  +   W
Sbjct:  819 LLALSNAKNWEVHQMDVKTAFLQGNLEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCW 881          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: UPI001C659808 (hypothetical protein n=1 Tax=Bacillus sp. SRB_331 TaxID=1969379 RepID=UPI001C659808)

HSP 1 Score: 48.1 bits (113), Expect = 2.660e-5
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYC--DPRKQVGLLKKAMYGLVHAGLLW 62
            + ++ A+L    RQLDV  A+L+A++ EEIY+  P+ +   DP K V  LKK++YGL  AGL+W
Sbjct:   64 IFALAASLNLTLRQLDVVGAFLQAELPEEIYMVQPEGFISEDP-KLVCRLKKSLYGLKQAGLVW 126          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A834VUE0_9PLEO (Integrase catalytic domain-containing protein n=9 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834VUE0_9PLEO)

HSP 1 Score: 49.3 bits (116), Expect = 3.410e-5
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW 62
            ++++ AA G +A Q DV  A+L A +E+ +YV+ PD Y +   ++  LK+A+YGL  A LLW
Sbjct: 1052 LMALTAAFGLKAYQYDVLNAFLNAPLEKLVYVQTPDPYVEELGKILELKRALYGLKDAPLLW 1113          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 48.9 bits (115), Expect = 4.550e-5
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW 62
            LS+  A G+   QLDVD A+L AD+ E++Y+E P+       +V  L KA+YGL  AG  W
Sbjct:   91 LSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAW 151          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A438I6P4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I6P4_VITVI)

HSP 1 Score: 47.8 bits (112), Expect = 5.340e-5
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPRK-QVGLLKKAMYGLVHAGLLW 62
            +LS++A L W+ +QLD+  A+L  D+EE+Y+ELP  +   RK +   L+    GL  +   W
Sbjct:   85 LLSLVANLNWQLQQLDIKNAFLNGDLEEVYMELPYGFDQGRKGKFASLENLSMGLKQSPCAW 146          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A8H7HK67_9AGAM (Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7HK67_9AGAM)

HSP 1 Score: 48.5 bits (114), Expect = 6.210e-5
Identity = 23/63 (36.51%), Postives = 42/63 (66.67%), Query Frame = 0
Query:    1 MVLSMIAALGWEARQLDVDMAYLEADVE-EIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW 62
            M++S+     W+ +QLDV++AYL A+V+ ++Y++    + D   +V  LK+++YGL  AG +W
Sbjct:  344 MLVSIANQYNWDIQQLDVNLAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKQSIYGLKQAGQMW 406          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A5N6PGN7_9ASTR1.990e-645.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000A2B6A5C2.740e-637.10uncharacterized protein LOC107627359 n=1 Tax=Arach... [more]
A0A803QDY6_CANSA1.300e-543.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GUB1_FAGSY1.770e-542.37Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7D9HXK4_PARCT2.470e-538.10Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001C6598082.660e-545.31hypothetical protein n=1 Tax=Bacillus sp. SRB_331 ... [more]
A0A834VUE0_9PLEO3.410e-541.94Integrase catalytic domain-containing protein n=9 ... [more]
A0A8K1CTN1_PYTOL4.550e-544.26Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A438I6P4_VITVI5.340e-537.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7HK67_9AGAM6.210e-536.51Reverse transcriptase (RNA-dependent DNA polymeras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..62
e-value: 9.5E-9
score: 35.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80902contigH-elongata_contig80902:1815..2003 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80902.15747.1mRNA_H-elongata_contig80902.15747.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80902 749..2051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80902.15747.1 ID=prot_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MVLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPRKQVGLLKK
AMYGLVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2