mRNA_H-elongata_contig80902.15747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80902.15747.1
Unique NamemRNA_H-elongata_contig80902.15747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.380e-47
Identity = 98/269 (36.43%), Postives = 152/269 (56.51%), Query Frame = 1
Query:   40 SIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKT-SIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYEGEPG 840
            SIR+VLS++ A+ +   QLD D A+  +D+ E++++E+P    +    +  L KA+YGL  A   W +     F   GF+    D CV+ ++     V V + YVDD+++A+ T  +  +    L S F +K+LGEA + LG  I  DR  GTL   Q +Y+  V  RF      ++V     G  LSK+ SP TDAE E+MR  PY+ ++G+L ++ T T PD+++   Q ++  +NPG  HW+AA + L+YL  T++ GI Y G  G
Sbjct:    3 SIRVVLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVCL-YVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNG 270          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 176 bits (446), Expect = 2.840e-47
Identity = 105/280 (37.50%), Postives = 163/280 (58.21%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTS--IVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
            Y+E+ SP   + S+R+V++M+A    E  Q+DV  A+L  ++ EE++++ P+ +    K+  V  LKK++YGL  A   W  KF     + GF+ +  D C++ +I  G   +++V+YVDD+L+A+      +Q    L   F +KD+GEASY +G  I+ DR+ G L   Q  YI  V ERF + K S  IVP   +G+  S +  P+ + E ++M QIPY  IVG+L +  T T P ISFA     +   NPG  HW+AA+K L+YL  T++  +TY+
Sbjct:   44 YKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVP-IQKGDKFSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTYK 321          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 178 bits (451), Expect = 1.940e-45
Identity = 100/280 (35.71%), Postives = 161/280 (57.50%), Query Frame = 1
Query:    1 HYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGV-TKTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
            ++ E+ SP   + S R++++++A    E  Q+DV  A+L  ++EE I++  P+ + +  K+  V  LKK++YGL  A   W KKF     + GF  +  D CV+ +++ G   + +++YVDD+L+AS+  +  K     L S F +K+LGEASY LG  I  DR  G L   Q  YI  + +RFG+ T  +     ++G+ L+K+  P+T+ E  EM  IPY  +VG+L +    T PD+SFA    ++   NPG  HW A +K L+YL RT++  + Y+
Sbjct:  327 YFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDKLTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVYK 605          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 178 bits (451), Expect = 2.270e-45
Identity = 105/278 (37.77%), Postives = 159/278 (57.19%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
            Y+E+ SP  ++ S R+V++++A    E  Q+DV  A+L  D+ E++Y+  PD +    K+  V  LKK++YGL  A   W  KF     + GF+ +  D C++ +I  G  ++ +V+YVDD+L+AS      ++    L   F +KDLGEAS+ LG  I  DR+ G L   Q  YI  V ERF ++  +   +   +G+ LSK   PQ D E  EM++IPY   VG+L +    T PDI+FA     +   +PG  HWRAA+K L+YL RT++  +TY
Sbjct:  358 YKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 634          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A438BZI3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZI3_VITVI)

HSP 1 Score: 176 bits (445), Expect = 3.380e-45
Identity = 105/283 (37.10%), Postives = 158/283 (55.83%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGV-----TKTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYE 828
            ++E+ SP   + S R++++++A    E  Q+DV  A+L  D+ EE+Y+E P  + +  K+  V  L K++YGL  A   W  KF       GF+ +  D C++ R+  G   + +V+YVDD+L+AS       +    L + F +KDLGEASY LG  I  DR  G L   Q  YI+ + +RF +     TK  IV    +G+  SK+  PQ D E EEM+ IPY  +VG+L +    T PDI+F      +   NPG  HW+AA+K L+YL  T++L +TY+
Sbjct:  202 FKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQWYLKFDKIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKFTKAPIV----KGDKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQ 479          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT)

HSP 1 Score: 178 bits (452), Expect = 3.910e-45
Identity = 100/277 (36.10%), Postives = 161/277 (58.12%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVT--KTSIVPSAARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
            Y E+ SP    +S+R + ++ A    +  Q+D   A+L+ D+ EEIY+  P  Y     +   LKKA+YGL  A  +W +K   + ++ GFQ+S  DTCV+ +I  G  +++I +YVDD+++ S      K+    L   F +KD+G+A + LG  IT  ++  TL  DQ  YI+ +  +FG++  K S  P     + LSK+DSP   AE+E+M+Q+PY+E +G L +++  T PDISF  ++ ++ N+NPG  HW A +   +YL  T +  +TY
Sbjct:  961 YAETYSPVVRHSSLRYLFALAAKHNLQVHQMDAVTAFLQGDLSEEIYMRQPPMYSTDNSKCCRLKKALYGLKQASRVWNRKLDEKLKSLGFQQSTYDTCVYFKI-EGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITETKSCITL--DQQHYIEEILNKFGMSECKPSYTPMQ-HNQKLSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRYLRGTSSYNLTY 1233          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 178 bits (452), Expect = 4.040e-45
Identity = 105/278 (37.77%), Postives = 160/278 (57.55%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
            Y+E+ SP  ++ S R+V++++A   +E  Q+DV  A+L  D+ E++Y+  P+ +    K+  V  LKK++YGL  A   W  KF     + GF+ +  D C++ +I  G  ++ +V+YVDD+L+AS      ++    L   F +KDLGEAS+ LG  I  DR+ G L   Q  YI  V ERF ++  S   +   +G+ LSK   PQ D E  EM++IPY   VG+L +    T PDI+FA     +   +PG  HWRAA+K L+YL RT++  +TY
Sbjct:  560 YKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 836          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A182GNA3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNA3_AEDAL)

HSP 1 Score: 171 bits (432), Expect = 5.590e-45
Identity = 100/263 (38.02%), Postives = 151/263 (57.41%), Query Frame = 1
Query:   55 LSMIAALGWEARQLDVDMAYLEADV--EEIYVELPDAYCDPRKQVGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPSAA-RGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITYEGE 834
            +++ A LG +  QLD   A+L+ D+  EEIYVE P+ +  P  QV  LKKA+YGL  A  +W KK        G Q+S+ D+CV+  ++ G  ++++ VYVDD+LV +            L   F +KDLG A   LG  +T  +  G +  DQ +YI+ + ERFG+   + V +     + LSK  SP++  +VE M  +P+RE+VG L +VA  T PDI+FA +  +  N NPG  HW AA++ L+YL  T+++ + Y  E
Sbjct:    1 MAVAARLGLKIHQLDAVTAFLQGDLMDEEIYVEQPEGFAIPGGQVCRLKKALYGLKQASRVWNKKLDNVLREIGLQQSKMDSCVYF-LIDGDKILIVAVYVDDMLVFANDDEIVDALKQQLMVRFQMKDLGYAEQILGMRVT--QVDGRITLDQEKYIEQLLERFGMNDCNPVSTPFDASQKLSKEMSPKSPDDVERMANVPFRELVGGLQFVAQCTRPDIAFAVNAVSSFNSNPGEAHWTAAKRILRYLKGTKDMKLIYSSE 260          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 177 bits (448), Expect = 1.220e-44
Identity = 104/278 (37.41%), Postives = 159/278 (57.19%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADV-EEIYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPS-AARGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
            Y+E+ SP  ++ S R+V++++A   +E  Q+DV  A+L  D+ E++Y+  PD +    K+  V  LKK++YGL  A   W  KF     + GF+ +  D C++ +I  G  ++ +V+YVDD+L+AS      ++    L   F +KDLGEAS+ LG  I  DR+ G L   Q  YI  V ERF ++  +   +   +G+ LSK   PQ D E  EM++IPY   VG+L +    T PDI+FA     +   +P   HWRAA+K L+YL RT++  +TY
Sbjct:  716 YKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTY 992          
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 172 bits (436), Expect = 1.460e-44
Identity = 100/280 (35.71%), Postives = 157/280 (56.07%), Query Frame = 1
Query:    4 YEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEE-IYVELPDAYCDPRKQ--VGLLKKAMYGLVHAGLLW*KKFGIEFEAKGFQRSQDDTCVFRRILHGIVVVVIVVYVDDLLVASATKRDEKQAVTDLCSCFTIKDLGEASYYLGCHITWDRNAGTLNFDQHQYIQTVAERFGVTKTSIVPSAA---RGEALSKSDSPQTDAEVEEMRQIPYREIVGALTWVATMTWPDISFAAHQKAKLNDNPGPTHWRAAEKALQYL*RTRNLGITY 825
            Y+E+ SP   + S+R++++++A    E  Q+DV  A+L  ++EE +++  P+ +    K+  V  LKK++YGL  A   W  KF     + GF+ +  D C++ ++  G   + +++YVDD+L+AS+      +    L   F +KD+GEASY +G  I  DR+ G L   Q  YI+ V ERFG+ K S  PS A   +G+  S    PQ + E + M +IPY   VG+L +  T T PDISFA     +   NPG  HW+A +K ++YL  T+   +TY
Sbjct:   97 YKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCS--PSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80902.15747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3J8V8_9STRA1.380e-4736.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4V1T029_9SPHI2.840e-4737.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH1.940e-4535.71Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9GV19_FAGSY2.270e-4537.77Integrase catalytic domain-containing protein n=6 ... [more]
A0A438BZI3_VITVI3.380e-4537.10Retrovirus-related Pol polyprotein from transposon... [more]
W4VRQ4_9DIPT3.910e-4536.10Putative retrovirus-related pol polyprotein from t... [more]
A0A2N9HDZ1_FAGSY4.040e-4537.77RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A182GNA3_AEDAL5.590e-4538.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EBY4_FAGSY1.220e-4437.41Integrase catalytic domain-containing protein n=4 ... [more]
A0A2P6S2B9_ROSCH1.460e-4435.71Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80902contigH-elongata_contig80902:749..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1303
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80902.15747.1prot_H-elongata_contig80902.15747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80902 1815..2003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.3067913-UTR-H-elongata_contig80902:748..18141622931215.3067913-UTR-H-elongata_contig80902:748..1814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80902 749..1814 -
1691679744.97973-UTR-H-elongata_contig80902:748..18141691679744.97973-UTR-H-elongata_contig80902:748..1814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80902 749..1814 -
1622931215.355385-UTR-H-elongata_contig80902:2003..20511622931215.355385-UTR-H-elongata_contig80902:2003..2051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80902 2004..2051 -
1691679745.0004728-UTR-H-elongata_contig80902:2003..20511691679745.0004728-UTR-H-elongata_contig80902:2003..2051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80902 2004..2051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.334197-CDS-H-elongata_contig80902:1814..20031622931215.334197-CDS-H-elongata_contig80902:1814..2003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80902 1815..2003 -
1691679744.989833-CDS-H-elongata_contig80902:1814..20031691679744.989833-CDS-H-elongata_contig80902:1814..2003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80902 1815..2003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80902.15747.1

>prot_H-elongata_contig80902.15747.1 ID=prot_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MVLSMIAALGWEARQLDVDMAYLEADVEEIYVELPDAYCDPRKQVGLLKK
AMYGLVHAGLLW*
back to top

mRNA from alignment at H-elongata_contig80902:749..2051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80902.15747.1 ID=mRNA_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1303bp|location=Sequence derived from alignment at H-elongata_contig80902:749..2051- (Himanthalia elongata Himel1 dioecious)
CACTACGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGTATTAGGAT GGTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACG TCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGATCTACGTTGAGCTC CCGGACGCATACTGTGACCCCAGGAAGCAAGTCGGTCTGCTAAAGAAGGC AATGTACGGACTAGTCCACGCCGGGCTGCTATGGTAAAAAAAGTTCGGGA TCGAGTTCGAGGCGAAAGGTTTCCAGAGATCTCAAGACGACACATGCGTG TTCCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGGTCTACGT CGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGAAGCAAGCGG TGACGGACCTGTGCTCCTGTTTTACCATCAAGGATCTAGGGGAGGCTTCA TATTACCTGGGATGCCACATCACGTGGGACCGGAACGCCGGGACACTGAA TTTCGACCAGCATCAGTATATACAGACTGTGGCGGAACGTTTTGGCGTGA CGAAGACCAGCATCGTCCCGTCTGCGGCACGAGGAGAAGCCCTTTCGAAA TCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCC CTACCGAGAAATCGTTGGGGCCCTAACATGGGTAGCAACGATGACCTGGC CCGACATTTCATTCGCTGCGCACCAAAAGGCGAAACTCAACGACAACCCG GGACCGACACACTGGAGGGCAGCCGAGAAAGCGCTGCAATATTTATAGCG CACTCGGAACCTCGGGATCACCTACGAAGGGGAACCGGGGGGGGGACCAA GTTATCAGCATGGATCGACGCGGACTACGGCTCCTGCCCGGGCACGCGTC GCTCAGTGTCGGGAGGGGCGGTGATGATGGTCGGCGTGGCCATCAGTTAG TTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGGCGTCGTCCAAATCGGA ATACGTCGTGCTGCCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGG TCAAGGAGTTCATGACCCCCCAAATCGACGTCGCCATCAAGATACACAAA GAAAACGAAGGCGAAATCAAGATGACGAAAACCCCTTCAGCAGTCGACGA ACGAGGCACGTGGAGATCAAGCATCACATTGTCCGCGATGCGGTCGATGG GGGGGTGGTTCACGTAAAATACGTTCGGTCCGGGTTAAAGCACGCCGACA TCCTCACGAAGTTCGTAGACGTCAAGACATCTGAGAAGCACGCGAGGTTC CTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig80902:749..2051-

>mRNA_H-elongata_contig80902.15747.1 ID=mRNA_H-elongata_contig80902.15747.1|Name=mRNA_H-elongata_contig80902.15747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig80902:749..2051- (Himanthalia elongata Himel1 dioecious)
ATGGTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGA
CGTCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGATCTACGTTGAGC
TCCCGGACGCATACTGTGACCCCAGGAAGCAAGTCGGTCTGCTAAAGAAG
GCAATGTACGGACTAGTCCACGCCGGGCTGCTATGGTAAATGGTACTCAG
CATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGG
CCTACCTGGAGGCCGATGTGGAGGAGATCTACGTTGAGCTCCCGGACGCA
TACTGTGACCCCAGGAAGCAAGTCGGTCTGCTAAAGAAGGCAATGTACGG
ACTAGTCCACGCCGGGCTGCTATGGTAA
back to top