prot_H-elongata_contig77027.15379.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig77027.15379.1
Unique Nameprot_H-elongata_contig77027.15379.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.800e-56
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 91
            VLDLQKYLDQGVRVKLQGGREV GVLKGFDPLVNVVLDECIEFIRDP DPYKLT+ETRELGLVVCRGTQVSLISP +GMEEIENPFM PEG
Sbjct:   12 VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.990e-48
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 91
            VLDL KYLDQGVRVK QGGREV GVLKG+D LVN+VLD+C+EFIRDP+DPY++TDETR LGLVVCRGTQVSLISP +GMEEI NPF+  EG
Sbjct:    9 VLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.790e-44
Identity = 65/90 (72.22%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 90
            +LDL KY+DQGVRVK QGGREV+G+LKG+D LVN+VLDEC+E++RDP DPY++TD+TR LG+VVCRGTQVSLISP +G EEI NPF+  E
Sbjct:   31 ILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.960e-44
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 90
            VLDL KY+DQGVRVK QGGREV G+LKGFD LVN+VLDE +EF+RDP DPY++T+ETR LGLVVCRG QVSLISP +GMEEI NPF+  E
Sbjct:   10 VLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQME 99          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.300e-43
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFM 87
            +LD+ KY+DQGVRVK QGGREV G LKGFD LVN+VLD+C EF+RDP DPY++TDE+R LG+VVCRGTQVSLISP +G EEI NPF+
Sbjct:   21 ILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFI 107          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.770e-42
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 90
            +LDL KY+DQGVRVK QGGREV GVLKG+D LVN+VLDE +E++RDP DPY++T++TR LG+VVCRGTQVSLISP +G EEI NPF+  E
Sbjct:    9 ILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVE 98          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.010e-40
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 90
            VLDL KYLD+ V V+ QGGREV G+L+GFD L+N+VLDE  E +RDP DPY+LTDETRELGLV+CRGTQVSLISP EG EEI NPF+  E
Sbjct:   13 VLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 102          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A022QZ17_ERYGU (Sm domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QZ17_ERYGU)

HSP 1 Score: 136 bits (343), Expect = 4.850e-40
Identity = 60/91 (65.93%), Postives = 78/91 (85.71%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 91
            VLDL K++D+GV+VKL GGR+V G+LKG+D L+N+VLD+ IEF+RDP DP K TD+TR LGL+VCRGT V L+SPT+G +EIENPF+ P+G
Sbjct:    8 VLDLAKFVDKGVQVKLTGGRQVSGILKGYDQLLNLVLDKAIEFLRDPDDPLKTTDQTRHLGLIVCRGTAVMLVSPTDGTDEIENPFVQPDG 98          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: L1JQ55_GUITC (Sm domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ55_GUITC)

HSP 1 Score: 136 bits (342), Expect = 6.690e-40
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 90
            VLDL +++DQ VRVK  GGREV G LKGFD LVN+VLDECIE+IRDP DPYKLT+ETR+LGL+VCRGT V+L+ P +GM EI NPF+  E
Sbjct:    9 VLDLSRHVDQKVRVKFSGGREVEGRLKGFDTLVNLVLDECIEYIRDPDDPYKLTNETRQLGLIVCRGTAVTLVCPCDGMMEIANPFISAE 98          
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A6P5EAT1_ANACO (sm-like protein LSM7 n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P5EAT1_ANACO)

HSP 1 Score: 135 bits (341), Expect = 9.800e-40
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 91
            VLDL K++D+GV+VKL GGR+V G LKG+D L+N+VLDE IEF+RDP DP K TD+TR LGL+VCRGT V L+SPTEG +EI NPF+ P+G
Sbjct:    8 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTEGTDEIANPFIQPDG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI1.800e-5693.41Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA1.990e-4880.22Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2CML5_9STRA1.790e-4472.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWT1_9STRA5.960e-4475.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BSU7_9STRA3.300e-4373.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2ST35_9STRA1.770e-4271.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CX90_9STRA1.010e-4072.22Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A022QZ17_ERYGU4.850e-4065.93Sm domain-containing protein n=3 Tax=Mesangiosperm... [more]
L1JQ55_GUITC6.690e-4070.00Sm domain-containing protein n=1 Tax=Guillardia th... [more]
A0A6P5EAT1_ANACO9.800e-4067.03sm-like protein LSM7 n=3 Tax=Mesangiospermae TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 2..75
e-value: 1.8E-23
score: 94.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..75
e-value: 3.5E-22
score: 77.9
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..91
e-value: 2.7E-40
score: 134.8
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 3.2E-29
score: 102.9
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..89
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 1..89
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77027contigH-elongata_contig77027:253..1628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77027.15379.1mRNA_H-elongata_contig77027.15379.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig77027 253..1786 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig77027.15379.1 ID=prot_H-elongata_contig77027.15379.1|Name=mRNA_H-elongata_contig77027.15379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADP
YKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf