mRNA_H-elongata_contig77027.15379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77027.15379.1
Unique NamemRNA_H-elongata_contig77027.15379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.030e-55
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 273
            VLDLQKYLDQGVRVKLQGGREV GVLKGFDPLVNVVLDECIEFIRDP DPYKLT+ETRELGLVVCRGTQVSLISP +GMEEIENPFM PEG
Sbjct:   12 VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.110e-47
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 273
            VLDL KYLDQGVRVK QGGREV GVLKG+D LVN+VLD+C+EFIRDP+DPY++TDETR LGLVVCRGTQVSLISP +GMEEI NPF+  EG
Sbjct:    9 VLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.780e-44
Identity = 65/90 (72.22%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 270
            +LDL KY+DQGVRVK QGGREV+G+LKG+D LVN+VLDEC+E++RDP DPY++TD+TR LG+VVCRGTQVSLISP +G EEI NPF+  E
Sbjct:   31 ILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.240e-43
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 270
            VLDL KY+DQGVRVK QGGREV G+LKGFD LVN+VLDE +EF+RDP DPY++T+ETR LGLVVCRG QVSLISP +GMEEI NPF+  E
Sbjct:   10 VLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQME 99
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.780e-42
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMV 264
            +LD+ KY+DQGVRVK QGGREV G LKGFD LVN+VLD+C EF+RDP DPY++TDE+R LG+VVCRGTQVSLISP +G EEI NPF+ 
Sbjct:   21 ILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIA 108
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.510e-42
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 270
            +LDL KY+DQGVRVK QGGREV GVLKG+D LVN+VLDE +E++RDP DPY++T++TR LG+VVCRGTQVSLISP +G EEI NPF+  E
Sbjct:    9 ILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVE 98
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.370e-40
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 270
            VLDL KYLD+ V V+ QGGREV G+L+GFD L+N+VLDE  E +RDP DPY+LTDETRELGLV+CRGTQVSLISP EG EEI NPF+  E
Sbjct:   13 VLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 102
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A022QZ17_ERYGU (Sm domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QZ17_ERYGU)

HSP 1 Score: 137 bits (344), Expect = 2.580e-39
Identity = 60/91 (65.93%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 273
            VLDL K++D+GV+VKL GGR+V G+LKG+D L+N+VLD+ IEF+RDP DP K TD+TR LGL+VCRGT V L+SPT+G +EIENPF+ P+G
Sbjct:    8 VLDLAKFVDKGVQVKLTGGRQVSGILKGYDQLLNLVLDKAIEFLRDPDDPLKTTDQTRHLGLIVCRGTAVMLVSPTDGTDEIENPFVQPDG 98
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: L1JQ55_GUITC (Sm domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ55_GUITC)

HSP 1 Score: 136 bits (343), Expect = 3.550e-39
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPE 270
            VLDL +++DQ VRVK  GGREV G LKGFD LVN+VLDECIE+IRDP DPYKLT+ETR+LGL+VCRGT V+L+ P +GM EI NPF+  E
Sbjct:    9 VLDLSRHVDQKVRVKFSGGREVEGRLKGFDTLVNLVLDECIEYIRDPDDPYKLTNETRQLGLIVCRGTAVTLVCPCDGMMEIANPFISAE 98
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BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Match: A0A6P5EAT1_ANACO (sm-like protein LSM7 n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P5EAT1_ANACO)

HSP 1 Score: 136 bits (342), Expect = 5.200e-39
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADPYKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG 273
            VLDL K++D+GV+VKL GGR+V G LKG+D L+N+VLDE IEF+RDP DP K TD+TR LGL+VCRGT V L+SPTEG +EI NPF+ P+G
Sbjct:    8 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTEGTDEIANPFIQPDG 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77027.15379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI1.030e-5593.41Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA1.110e-4780.22Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2CML5_9STRA9.780e-4472.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWT1_9STRA3.240e-4375.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BSU7_9STRA1.780e-4272.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2ST35_9STRA9.510e-4271.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CX90_9STRA5.370e-4072.22Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A022QZ17_ERYGU2.580e-3965.93Sm domain-containing protein n=3 Tax=Mesangiosperm... [more]
L1JQ55_GUITC3.550e-3970.00Sm domain-containing protein n=1 Tax=Guillardia th... [more]
A0A6P5EAT1_ANACO5.200e-3967.03sm-like protein LSM7 n=3 Tax=Mesangiospermae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77027contigH-elongata_contig77027:253..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.6e-42
Seed eggNOG ortholog2880.D8LPU6
Preferred nameLSM7
KEGG koko:K12626,ko:K16353
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsKOG1781@1,KOG1781@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04516
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSm-like protein LSm7
Ec32 orthologEc-18_002540.1
Exons2
Model size434
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77027.15379.1prot_H-elongata_contig77027.15379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77027 253..1628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.2125149-CDS-H-elongata_contig77027:252..3881622931175.2125149-CDS-H-elongata_contig77027:252..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77027 253..388 +
1691679729.0752218-CDS-H-elongata_contig77027:252..3881691679729.0752218-CDS-H-elongata_contig77027:252..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77027 253..388 +
1622931175.2287972-CDS-H-elongata_contig77027:1488..16281622931175.2287972-CDS-H-elongata_contig77027:1488..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77027 1489..1628 +
1691679729.0858648-CDS-H-elongata_contig77027:1488..16281691679729.0858648-CDS-H-elongata_contig77027:1488..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77027 1489..1628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.2467864-UTR-H-elongata_contig77027:1628..17861622931175.2467864-UTR-H-elongata_contig77027:1628..1786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77027 1629..1786 +
1691679729.0953548-UTR-H-elongata_contig77027:1628..17861691679729.0953548-UTR-H-elongata_contig77027:1628..1786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77027 1629..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77027.15379.1

>prot_H-elongata_contig77027.15379.1 ID=prot_H-elongata_contig77027.15379.1|Name=mRNA_H-elongata_contig77027.15379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDECIEFIRDPADP
YKLTDETRELGLVVCRGTQVSLISPTEGMEEIENPFMVPEG*
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mRNA from alignment at H-elongata_contig77027:253..1786+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77027.15379.1 ID=mRNA_H-elongata_contig77027.15379.1|Name=mRNA_H-elongata_contig77027.15379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1534bp|location=Sequence derived from alignment at H-elongata_contig77027:253..1786+ (Himanthalia elongata Himel1 dioecious)
GTCCTGGACCTCCAAAAGTACTTGGACCAAGGAGTTCGAGTGAAGCTTCA
AGGGGGCAGGGAAGTGCGAGGAGTGCTGAAAGGGTTCGACCCGCTCGTGA
ACGTTGTCCTCGACGAGTGCATCGAGTTTATCCGAGGTGAGAGCATGACG
GTGGCGAGCCCCGCGCGTGGTGGTTGAACGAGGGCGGCACCGAGCTGGAG
CCTGCTGGCGAGATTCTCGGCCGTTGATGACGGGAACTCGCTCCGTGTGC
ATAAACCTTTACACAGGACTCGGTTTGATCATTACCGACCGTTACCGGAA
CTTGTGCACAAACTCTGTGCTCTGGGCAGCCCCGAGCGTGCGCGGTTTGC
CTCTCGCGCGGCAGAGGATCCGTCCGTTTCCCTTGGGAAGGTCGCCGGAA
TTGTGCCAACGGAAATTTGTAAATAATGTCTCTCCGTACAGACACCGACC
GTATCAGAACCCGCGTTGTAGGATCCCTAAAGAGATCACGCGCCACGAGT
CAGATTGTGTCAGCTGCTGAGTTTTGTACGTAGGTTAGGGCGGGTATTAA
CGGGGTTACAAAAATATGTTTTCAGACGATTTAGATTTGAATTTAAATCG
GGCTCTGATTGGACGAAGGCTATGCGTTATTTAGCTTTCAACCAATCAGA
GCCTGATTTAAATTTAAATTGGCTAAAAAAAAAAAATGTAACTCCGTTAA
TACCCGCCCCGCCCTTATAGATGTCCTCGTTACTAGACATGGACGTCGAG
TTCAAGGGCCGTGTACCCGGCGCAAGCCCTCGAGATAGACCAGACCAGAC
CAGACGCGAGAGAGTTGATGTATCTTGCATGTGGACCAGTCACGGTAGTG
CGTTCAACTTGGACCAAGTGCTCCTCGTTGAAGCAGGAGGCCTTTCTGCT
CTGTGATGGTCTTCAGAGGACAAATCCAAGGAGTCAGACGAAAGAAACTT
GAATCACGTAAATACACCAACACGATACCCACTCCCCTCTCGCCTCTCCC
CGACGGGATGAAAGGATTAAGGGATAGATGGATGAAAACAGCGACCCGAC
TGGGGGGCGCTCGTACTGCTTCGTAGAAGCGGAGCTTTACGTTCGTAATA
TTTCAAAATACTGTACCTTGGTAAAGGGTTTCCTTTGATGTAGGCGTTTT
CCGTACGCTCTTTTTTACCTAAAATATCTATATATATATATATTAATTTA
TGTATTTATTTATTCTTGGTTGGTCCTGGCGCACAGATCCGGCAGACCCT
TACAAGCTCACCGACGAGACGAGGGAGCTTGGGCTCGTCGTCTGCAGGGG
AACGCAAGTCAGTCTCATCTCCCCGACGGAGGGAATGGAAGAGATCGAAA
ACCCCTTCATGGTTCCAGAGGGATAGGAATAGAAGTGCTTTAATAAATAC
GGTAGTAAATGGTATCAAGAGTGATCTACGGGAAAAATATTAGGTCTAAT
AATAGATGCCTTAAATCACGGTAGAGCCGTTGCTTCACGCGGTCCAAGAT
ATCTATCTCTGCGCGTATTTTGTGCGGCGGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig77027:253..1786+

>mRNA_H-elongata_contig77027.15379.1 ID=mRNA_H-elongata_contig77027.15379.1|Name=mRNA_H-elongata_contig77027.15379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig77027:253..1786+ (Himanthalia elongata Himel1 dioecious)
GTCCTGGACCTCCAAAAGTACTTGGACCAAGGAGTTCGAGTGAAGCTTCA
AGGGGGCAGGGAAGTGCGAGGAGTGCTGAAAGGGTTCGACCCGCTCGTGA
ACGTTGTCCTCGACGAGTGCATCGAGTTTATCCGAGGTCCTGGACCTCCA
AAAGTACTTGGACCAAGGAGTTCGAGTGAAGCTTCAAGGGGGCAGGGAAG
TGCGAGGAGTGCTGAAAGGGTTCGACCCGCTCGTGAACGTTGTCCTCGAC
GAGTGCATCGAGTTTATCCGAGATCCGGCAGACCCTTACAAGCTCACCGA
CGAGACGAGGGAGCTTGGGCTCGTCGTCTGCAGGGGAACGCAAGTCAGTC
TCATCTCCCCGACGGAGGGAATGGAAGAGATCGAAAACCCCTTCATGGTT
CCAGAGGGATAGATCCGGCAGACCCTTACAAGCTCACCGACGAGACGAGG
GAGCTTGGGCTCGTCGTCTGCAGGGGAACGCAAGTCAGTCTCATCTCCCC
GACGGAGGGAATGGAAGAGATCGAAAACCCCTTCATGGTTCCAGAGGGAT
AG
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