prot_H-elongata_contig74737.15151.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74737.15151.1
Unique Nameprot_H-elongata_contig74737.15151.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length97
Homology
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BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Match: D7FXW5_ECTSI (SAGA-associated factor 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.330e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:    1 RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSS 48
            RIPP++PSTSITCPSC RAVGAARYAPHLDKCALGSSRGRASR ARSS
Sbjct:   79 RIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSS 126
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BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Match: A0A6H5KUN9_9PHAE (SAGA-associated factor 11 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.890e-18
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 
Query:    1 RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSSM 49
            RIPP++PSTSITCPSC RAVGAARYAPHLDKCALGSSRGRASR ARSS 
Sbjct:  160 RIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSSQ 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW5_ECTSI7.330e-2091.67SAGA-associated factor 11 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KUN9_9PHAE1.890e-1889.80SAGA-associated factor 11 (Fragment) n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013246SAGA complex, Sgf11 subunitPFAMPF08209Sgf11coord: 9..32
e-value: 3.8E-11
score: 42.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74737contigH-elongata_contig74737:286..780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74737.15151.1mRNA_H-elongata_contig74737.15151.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74737 284..780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74737.15151.1 ID=prot_H-elongata_contig74737.15151.1|Name=mRNA_H-elongata_contig74737.15151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSSMR
GRGSSAKSDDLGALAPNATASTPPEQTKLVKLLERPTPAAKPLAKHT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013246SAGA_su_Sgf11