mRNA_H-elongata_contig74737.15151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74737.15151.1
Unique NamemRNA_H-elongata_contig74737.15151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Match: D7FXW5_ECTSI (SAGA-associated factor 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.330e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSS 144
            RIPP++PSTSITCPSC RAVGAARYAPHLDKCALGSSRGRASR ARSS
Sbjct:   79 RIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSS 126
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BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Match: A0A6H5KUN9_9PHAE (SAGA-associated factor 11 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.890e-18
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSSM 147
            RIPP++PSTSITCPSC RAVGAARYAPHLDKCALGSSRGRASR ARSS 
Sbjct:  160 RIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSARSSQ 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74737.15151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW5_ECTSI7.330e-2091.67SAGA-associated factor 11 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KUN9_9PHAE1.890e-1889.80SAGA-associated factor 11 (Fragment) n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74737contigH-elongata_contig74737:284..780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.3838134-CDS-H-elongata_contig74737:285..3661622931151.3838134-CDS-H-elongata_contig74737:285..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74737 286..366 -
1691679719.3667557-CDS-H-elongata_contig74737:285..3661691679719.3667557-CDS-H-elongata_contig74737:285..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74737 286..366 -
1622931151.4026082-CDS-H-elongata_contig74737:570..7801622931151.4026082-CDS-H-elongata_contig74737:570..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74737 571..780 -
1691679719.3782327-CDS-H-elongata_contig74737:570..7801691679719.3782327-CDS-H-elongata_contig74737:570..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74737 571..780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74737.15151.1prot_H-elongata_contig74737.15151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74737 286..780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74737.15151.1

>prot_H-elongata_contig74737.15151.1 ID=prot_H-elongata_contig74737.15151.1|Name=mRNA_H-elongata_contig74737.15151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
RIPPKDPSTSITCPSCGRAVGAARYAPHLDKCALGSSRGRASRPARSSMR
GRGSSAKSDDLGALAPNATASTPPEQTKLVKLLERPTPAAKPLAKHT
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mRNA from alignment at H-elongata_contig74737:284..780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74737.15151.1 ID=mRNA_H-elongata_contig74737.15151.1|Name=mRNA_H-elongata_contig74737.15151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig74737:284..780- (Himanthalia elongata Himel1 dioecious)
CGTATTCCTCCCAAAGACCCTTCCACAAGTATCACGTGTCCTAGCTGCGG
ACGAGCCGTAGGAGCCGCACGCTACGCTCCGCACCTAGACAAGTGCGCGC
TCGGGTCGTCTCGAGGGAGGGCATCGAGGCCGGCAAGATCATCGATGAGA
GGGCGAGGAAGCAGCGCGAAGAGCGATGACCTCGGTGCCTTGGCACCAAA
TGCTACCGCTGTAAGTTTCGGTGTGTGTGTGTGTGTGGGGTGGGGGGTTA
TTGTTTGCCGGCGAGCGTGGGGGGAATCTGAAATGGCCATGCTGTGCACC
GTACCGTACTGTGTGTGTAAGCAACGCTTCCTCCTCCGCGTGGTTGTGGC
TCCGTTCTATGTTTTGGCCCACCTTCTTCCTTCTCGTCCGGCAATTCGTT
TGTTTCCTTCTCAGTCGACCCCGCCAGAACAAACCAAGCTTGTAAAGCTT
CTCGAACGCCCCACGCCCGCGGCGAAGCCGTTGGCGAAACACACCGT
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Coding sequence (CDS) from alignment at H-elongata_contig74737:284..780-

>mRNA_H-elongata_contig74737.15151.1 ID=mRNA_H-elongata_contig74737.15151.1|Name=mRNA_H-elongata_contig74737.15151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig74737:284..780- (Himanthalia elongata Himel1 dioecious)
CGTATTCCTCCCAAAGACCCTTCCACAAGTATCACGTGTCCTAGCTGCGG
ACGAGCCGTAGGAGCCGCACGCTACGCTCCGCACCTAGACAAGTGCGCGC
TCGGGTCGTCTCGAGGGAGGGCATCGAGGCCGGCAAGATCATCGATGAGA
GGGCGAGGAAGCAGCGCGAAGAGCGATGACCTCGGTGCCTTGGCACCAAA
TGCTACCGCTCGTATTCCTCCCAAAGACCCTTCCACAAGTATCACGTGTC
CTAGCTGCGGACGAGCCGTAGGAGCCGCACGCTACGCTCCGCACCTAGAC
AAGTGCGCGCTCGGGTCGTCTCGAGGGAGGGCATCGAGGCCGGCAAGATC
ATCGATGAGAGGGCGAGGAAGCAGCGCGAAGAGCGATGACCTCGGTGCCT
TGGCACCAAATGCTACCGCTTCGACCCCGCCAGAACAAACCAAGCTTGTA
AAGCTTCTCGAACGCCCCACGCCCGCGGCGAAGCCGTTGGCGAAACACAC
CTCGACCCCGCCAGAACAAACCAAGCTTGTAAAGCTTCTCGAACGCCCCA
CGCCCGCGGCGAAGCCGTTGGCGAAACACACC
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