prot_H-elongata_contig74622.15143.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74622.15143.1
Unique Nameprot_H-elongata_contig74622.15143.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length357
Homology
BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.300e-47
Identity = 145/354 (40.96%), Postives = 170/354 (48.02%), Query Frame = 0
Query:   12 GSCGSGCSRGFSPLRSRSQGH-LHQAGSGGAGIPYSYCGGGHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GPCTSRGSPPRDVHFPTLAHSTSAGSAHGXXXXX----YPSHTRSHSYSIPPTSHG------------HNSGGAGGGYSHHA---SQGADQHLAVGPQHHIALKT------------------------SHSYNVPPPMHMSPVYRERRERSESRGYQVPLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIRGMG----------HETIRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSPASGPVDSF 308
            G+CG GCS GFSP+RSR  GH +H   +GG G+PY Y GG HG +H NQPMVCVVVPAQRAAALGL+  P H +   G CTSRG+ P D HF +LA S+       XXXXX    Y SHTRSHS    P SHG            H+ G   G + H     + G   HL+V P                                  SY  PP MHM P+ RER+ R+E R Y  P  +                 EYERS    S   ++Y  P W  D AG  G G          H  +RSQSPP  VRS    RNGGGAPRP     R YD  Y  +RY+   G V+ F
Sbjct:   23 GACGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHG-EHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQ---PISHGXXXXXXXXXXYGHHGGSPHGNFDHXXXXXAAGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDY--PSGASGXXXXXXXXXXSPSFGEYERSSQSESHLHSAYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRS----RNGGGAPRPPSASPRAYDGHYSSTRYNGRGG-VEGF 365          
BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.020e-40
Identity = 135/346 (39.02%), Postives = 160/346 (46.24%), Query Frame = 0
Query:   12 GSCGSGCSRGFSPLRSRSQGH-LHQAGSGGAGIPYSYCGGGHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GPCTSRGSPPRDVHFPTLAHSTSAGSAHGXXXXXYPSHTRSHSYSIPPTSHGHNSGGAGGGYS--------HHASQGADQHLAVGPQHHIALKTS--------------------------------HSYNVPPPMHMSPVYRERRERSESRGYQVPLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIRGMGHET----------IRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSPASG 303
            G+CG GCS GFSP+RSR  GH +H   +GG G+PY + GG HG +H NQPMVCVVVPAQRAAALG +  P H     G CTSRG+ P D HF +LA S +A     XX   Y SHTRS+S    P SHG                   H          A G  HH+ +  S                                 SY  PP MHM P+ RER+ R+E R Y      G+S ++G +   G    EYERS    S   + +  P W  D AG  G G              RSQSPP  VRS    R GGGAPRP     R YD  Y  +RY+   G
Sbjct:  386 GACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHG-EHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXXHPGYASHTRSNSQ---PMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAASGTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYPA----GASGSSGSSPSFG----EYERSSQSESHLHSPHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRS----RIGGGAPRPPSASPRAYDGHYSSTRYNGRGG 715          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM18_ECTSI2.300e-4740.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH7_9PHAE5.020e-4039.02RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74622contigH-elongata_contig74622:1503..2929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74622.15143.1mRNA_H-elongata_contig74622.15143.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74622 1035..2929 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74622.15143.1 ID=prot_H-elongata_contig74622.15143.1|Name=mRNA_H-elongata_contig74622.15143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=357bp
MFLPKGHRGGGGSCGSGCSRGFSPLRSRSQGHLHQAGSGGAGIPYSYCGG
GHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAMGPCTSRGSPPRDVHFP
TLAHSTSAGSAHGHGHGRYPSHTRSHSYSIPPTSHGHNSGGAGGGYSHHA
SQGADQHLAVGPQHHIALKTSHSYNVPPPMHMSPVYRERRERSESRGYQV
PLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIR
GMGHETIRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSP
ASGPVDSFPPGIPLTGRRHSGSSLLAGRDSMRQDALAASNYFYSLGDHGN
EHAYDHD
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