prot_H-elongata_contig73615.15050.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73615.15050.1
Unique Nameprot_H-elongata_contig73615.15050.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length131
Homology
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.230e-40
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR----WDNHHPG 130
            +VFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV + ++ R    ++N H G
Sbjct:   28 KVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKG 115          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.390e-35
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            +VF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV++ ++ R
Sbjct:   28 KVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQR 104          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A7S3GNQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNQ2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.020e-33
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWD 125
            + F FCRSKCHKNF RKRNPRK KWTKAFR++AGKEM VD+TF+FEKRRNRPVKY+RETM  TL AMKKVS+ ++ R D
Sbjct:   27 KTFEFCRSKCHKNFNRKRNPRKMKWTKAFRKSAGKEMTVDSTFEFEKRRNRPVKYNRETMETTLRAMKKVSEIQTKRQD 105          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A6U0RU55_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RU55_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.720e-32
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWDNHH 128
            +VFRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMAVD+TF+FEKRRNRPVKYDR+ MGKT++AM++V + K AR    H
Sbjct:   17 KVFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFEFEKRRNRPVKYDRDLMGKTIVAMQRVQKIKDAREQRFH 98          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.060e-32
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0
Query:   49 FRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V   K AR
Sbjct:   29 FRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAR 103          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A812VXV3_SYMMI (Rsl24d1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VXV3_SYMMI)

HSP 1 Score: 119 bits (298), Expect = 1.200e-31
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWD 125
            + F FCRSKCHKNF +KRNPRK KWTKAFR+ AGKEM VD+TF+FEKRRNRP+KY+RE MG TL AMKKVS  K  R D
Sbjct:   27 KTFEFCRSKCHKNFNKKRNPRKMKWTKAFRKHAGKEMTVDSTFEFEKRRNRPIKYNRELMGTTLRAMKKVSDIKHKRQD 105          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.420e-31
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 0
Query:   49 FRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V   K AR
Sbjct:   29 FRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAR 103          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A484E612_BRELC (TRASH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E612_BRELC)

HSP 1 Score: 118 bits (296), Expect = 2.470e-31
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            ++FRFCRSKCHKNF RKRNPRK KWTKAFR++AGKEMA+DTTFDF+K+RNR VKYDRE MG T+ A+++V+Q K  R
Sbjct:   27 KIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKSAGKEMALDTTFDFDKQRNRAVKYDRELMGATIHAIERVTQIKEKR 103          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: K3X0U7_GLOUD (TRASH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0U7_GLOUD)

HSP 1 Score: 118 bits (295), Expect = 3.600e-31
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            ++FRFCRSKCHKNF RKRNPRK KWTK+FR+AAGKEMA+DTTFDFEK RNR VKYDRE MG T+ A+++V Q K  R
Sbjct:   27 KIFRFCRSKCHKNFNRKRNPRKVKWTKSFRKAAGKEMALDTTFDFEKLRNRAVKYDRELMGATIHAIERVQQIKEKR 103          
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A7S3PS99_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PS99_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.920e-31
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   47 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 123
            +VF+FCRSKCHK+F  KRNPRK KWTKAFR+  GKEMAVD TFDFEKRRNRPVKYDRE M +TL AMK+V + KSAR
Sbjct:   27 KVFKFCRSKCHKSFKLKRNPRKMKWTKAFRKTRGKEMAVDPTFDFEKRRNRPVKYDRELMQQTLRAMKRVEEIKSAR 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE2.230e-4080.68TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA1.390e-3580.52RL30, ribosomal protein 30 60S large ribosomal sub... [more]
A0A7S3GNQ2_9STRA7.020e-3374.68Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U0RU55_9STRA4.720e-3268.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FH63_9STRA9.060e-3276.0060S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A812VXV3_SYMMI1.200e-3173.42Rsl24d1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A448YUA5_9STRA1.420e-3174.67TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
A0A484E612_BRELC2.470e-3172.73TRASH domain-containing protein n=1 Tax=Bremia lac... [more]
K3X0U7_GLOUD3.600e-3174.03TRASH domain-containing protein n=1 Tax=Globispora... [more]
A0A7S3PS99_9STRA3.920e-3176.62Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 46..85
e-value: 6.1E-15
score: 55.2
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 47..128
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20coord: 42..88
e-value: 7.3E-13
score: 50.3
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 47..128
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 46..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73615contigH-elongata_contig73615:125..991 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73615.15050.1mRNA_H-elongata_contig73615.15050.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73615 125..991 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73615.15050.1 ID=prot_H-elongata_contig73615.15050.1|Name=mRNA_H-elongata_contig73615.15050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
RHYSITGPYGVYGGRPSVTLAADAAAADRACSVLSRVFCANLWGREQVFR
FCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVK
YDRETMGKTLLAMKKVSQSKSARWDNHHPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf