mRNA_H-elongata_contig73615.15050.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.230e-40 Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR----WDNHHPG 390
+VFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV + ++ R ++N H G
Sbjct: 28 KVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKG 115
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.390e-35 Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
+VF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV++ ++ R
Sbjct: 28 KVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQR 104
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A7S3GNQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNQ2_9STRA) HSP 1 Score: 121 bits (303), Expect = 7.020e-33 Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWD 375
+ F FCRSKCHKNF RKRNPRK KWTKAFR++AGKEM VD+TF+FEKRRNRPVKY+RETM TL AMKKVS+ ++ R D
Sbjct: 27 KTFEFCRSKCHKNFNRKRNPRKMKWTKAFRKSAGKEMTVDSTFEFEKRRNRPVKYNRETMETTLRAMKKVSEIQTKRQD 105
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A6U0RU55_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RU55_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.720e-32 Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWDNHH 384
+VFRFCRSKCH+NF +KRNPRK WTKA+R+ GKEMAVD+TF+FEKRRNRPVKYDR+ MGKT++AM++V + K AR H
Sbjct: 17 KVFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFEFEKRRNRPVKYDRDLMGKTIVAMQRVQKIKDAREQRFH 98
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA) HSP 1 Score: 120 bits (300), Expect = 9.060e-32 Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 145 FRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
FRFCRSKCH+NF +KRNPRK WTKA+R+ GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V K AR
Sbjct: 29 FRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAR 103
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A812VXV3_SYMMI (Rsl24d1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VXV3_SYMMI) HSP 1 Score: 119 bits (298), Expect = 1.200e-31 Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSARWD 375
+ F FCRSKCHKNF +KRNPRK KWTKAFR+ AGKEM VD+TF+FEKRRNRP+KY+RE MG TL AMKKVS K R D
Sbjct: 27 KTFEFCRSKCHKNFNKKRNPRKMKWTKAFRKHAGKEMTVDSTFEFEKRRNRPIKYNRELMGTTLRAMKKVSDIKHKRQD 105
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.420e-31 Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 145 FRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
FRFCRSKCH+NF +KRNPRK WTKA+R+ GKEMAVD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V K AR
Sbjct: 29 FRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAR 103
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A484E612_BRELC (TRASH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E612_BRELC) HSP 1 Score: 118 bits (296), Expect = 2.470e-31 Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
++FRFCRSKCHKNF RKRNPRK KWTKAFR++AGKEMA+DTTFDF+K+RNR VKYDRE MG T+ A+++V+Q K R
Sbjct: 27 KIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKSAGKEMALDTTFDFDKQRNRAVKYDRELMGATIHAIERVTQIKEKR 103
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: K3X0U7_GLOUD (TRASH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0U7_GLOUD) HSP 1 Score: 118 bits (295), Expect = 3.600e-31 Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
++FRFCRSKCHKNF RKRNPRK KWTK+FR+AAGKEMA+DTTFDFEK RNR VKYDRE MG T+ A+++V Q K R
Sbjct: 27 KIFRFCRSKCHKNFNRKRNPRKVKWTKSFRKAAGKEMALDTTFDFEKLRNRAVKYDRELMGATIHAIERVQQIKEKR 103
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Match: A0A7S3PS99_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PS99_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.920e-31 Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 139 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMAVDTTFDFEKRRNRPVKYDRETMGKTLLAMKKVSQSKSAR 369
+VF+FCRSKCHK+F KRNPRK KWTKAFR+ GKEMAVD TFDFEKRRNRPVKYDRE M +TL AMK+V + KSAR
Sbjct: 27 KVFKFCRSKCHKSFKLKRNPRKMKWTKAFRKTRGKEMAVDPTFDFEKRRNRPVKYDRELMQQTLRAMKRVEEIKSAR 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73615.15050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73615.15050.1 >prot_H-elongata_contig73615.15050.1 ID=prot_H-elongata_contig73615.15050.1|Name=mRNA_H-elongata_contig73615.15050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp RHYSITGPYGVYGGRPSVTLAADAAAADRACSVLSRVFCANLWGREQVFRback to top mRNA from alignment at H-elongata_contig73615:125..991+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73615.15050.1 ID=mRNA_H-elongata_contig73615.15050.1|Name=mRNA_H-elongata_contig73615.15050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig73615:125..991+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73615:125..991+ >mRNA_H-elongata_contig73615.15050.1 ID=mRNA_H-elongata_contig73615.15050.1|Name=mRNA_H-elongata_contig73615.15050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig73615:125..991+ (Himanthalia elongata Himel1 dioecious)back to top |