prot_H-elongata_contig73262.15004.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig73262.15004.1
Unique Name	prot_H-elongata_contig73262.15004.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	76

Homology

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BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.450e-19
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRC+LADS  P+F+W EL  TAVYL NR PH+AL+  TP+K L+G++A L HLRVIG+R F+H +   RKLE  A
Sbjct:  687 VRCLLADSTLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 761

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.530e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRC+LADS  P+F+W EL  TAVYL NR PH AL+  TP+K L+G++A L HLRVIG+R F+H +   RKLE  A
Sbjct:  218 VRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 292

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.530e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRC+LADS  P+F+W EL  TAVYL NR PH AL+  TP+K L+G++A L HLRVIG+R F+H +   RKLE  A
Sbjct:  461 VRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 535

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.570e-19
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLH-IKDARKLEAAA 75
            VRC+LADS  P+F+W EL  TAVYL NR PH AL+  TP+K L+G++A L HLRVIG+R F+H     RKLE  A
Sbjct:  769 VRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEATHTRKLEHRA 843

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BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.570e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRC+LADS  P+F+W EL  TAVYL NR PH AL+  TP+K L+G++A L HLRVIG+R F+H +   RKLE  A
Sbjct:  643 VRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRA 717

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.240e-19
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A
Sbjct:  748 VRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRA 822

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BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.240e-19
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A
Sbjct:  654 VRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRA 728

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BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.280e-19
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA 75
            VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A
Sbjct:  977 VRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRA 1051

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-18
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0

Query:    1 MVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIK 66
            MVRC+L DSG P F+W +L  TA YL NR PH AL   TP+K L+G++A+L HLR IGAR F+H++
Sbjct:  107 MVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVE 172

[Close]

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.050e-18
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0

Query:    2 VRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLH 64
            VRC+LADS  P+F+WWEL  TAVYL  R PH AL+  TP+K L+G++A L HLRVI +R F+H
Sbjct:  701 VRCLLADSTLPNFLWWELIQTAVYLSTRVPHAALQNGTPYKALYGKDAYLGHLRVIVSRAFVH 763

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot

BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JIN1_9PHAE	2.450e-19	58.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KL37_9PHAE	4.530e-19	58.67	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KXM1_9PHAE	4.530e-19	58.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JC75_9PHAE	4.570e-19	58.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC00_9PHAE	4.570e-19	58.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJN3_9PHAE	6.240e-19	58.67	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JYB5_9PHAE	6.240e-19	58.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	6.280e-19	58.67	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5L6R7_9PHAE	1.570e-18	57.58	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBV6_9PHAE	4.050e-18	60.32	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..73 e-value: 2.8E-5 score: 25.4
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 1..68
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..68
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..56

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig73262	contig	H-elongata_contig73262:934..1161 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig73262.15004.1	mRNA_H-elongata_contig73262.15004.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig73262 832..1365 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig73262.15004.1 ID=prot_H-elongata_contig73262.15004.1|Name=mRNA_H-elongata_contig73262.15004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEAD
LSHLRVIGARTFLHIKDARKLEAAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf