mRNA_H-elongata_contig73262.15004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73262.15004.1
Unique NamemRNA_H-elongata_contig73262.15004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 6.770e-47
Identity = 81/147 (55.10%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:   97 EFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            EF++YCL+ G+   +A+TNTPQQIG +ER GRTL AMVRC+L DSG P F+W  L  TAVYL NR PH AL   TP+K L+ ++A+L HLR IGAR F+H++   R+L+  A EG +C YS + KS+ ++NP+T  V ESRNV F+E
Sbjct:  344 EFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHTRELDPKAWEGCLCGYSMDSKSFHIYNPETGNVRESRNVIFVE 490
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.720e-46
Identity = 89/160 (55.62%), Postives = 110/160 (68.75%), Query Frame = 1 
Query:   58 RYGTGITFEGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            R G G  F  A   ++QYCL+ GI   FA+ NTP QIG +ER GRT+  +VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A EG +  YS + KSYR++N +TRRV ESRNV FIE
Sbjct:  606 RAGKGAEFTNAA--YRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 763
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.450e-45
Identity = 81/152 (53.29%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   82 EGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKDARK-LEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            E   SEF+ YC  + I   +AATNTPQQIG SER G+TL  + RC+L D  FP  MWW+L +TA YL NR+PH AL   TP+  LH +  DLS LRVIGAR F+H +  RK L+  A EG +C +  + ++YRV NP    VVESRN+TFIE
Sbjct:   21 ENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIE 172
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.110e-45
Identity = 88/160 (55.00%), Postives = 109/160 (68.12%), Query Frame = 1 
Query:   58 RYGTGITFEGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            R   G  F  A   ++QYCL+ GI   FA+ NTP QIG +ER GRT+  +VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A EG +  YS + KSYR++N +TRRV ESRNV FIE
Sbjct:  700 RADKGTEFTNAA--YRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 857
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.270e-45
Identity = 88/160 (55.00%), Postives = 109/160 (68.12%), Query Frame = 1 
Query:   58 RYGTGITFEGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            R   G  F  A   ++QYCL+ GI   FA+ NTP QIG +ER GRT+  +VRCMLADS  PS +W EL  TAVYL NRTPH AL   TP+K L G +A L HLRV+GAR F+H +   +KL++ A EG +  YS + KSYR++N +TRRV ESRNV FIE
Sbjct:  929 RADKGTEFTNAA--YRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 1086
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.040e-44
Identity = 84/148 (56.76%), Postives = 107/148 (72.30%), Query Frame = 1 
Query:   94 SEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKD-ARKLEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            +EF+QYC + GI   FA+ N PQQIG +ER GRT+  +VRC+LADS  P+F+W EL  TAVYL NR PH AL+  TP+K L+G++A L HLRVIG+R F+H +   RKLE  A EG +  YS + KSYR++N +TRRV  SRNV FIE
Sbjct:  180 AEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIE 327
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.640e-42
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   82 EGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKDARK-LEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            E   S+F+ YC  + I   +AATNTPQQIGVSER G+TL  + RC+L D  FP  MW E+ +TA YL NR+PH AL   TP+  LH +  DLS LRVIGAR F+H +  RK L+  A EG +C +  + ++YRV +P    VVESRNVTFIE
Sbjct:  132 ENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLDPSNGAVVESRNVTFIE 283
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.850e-42
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   82 EGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKDARK-LEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            E   SEF+ YC  + I   +AATNTPQQIGVSER G+TL  + RC+L D  FP  MW EL +TA YL NR+PH AL   TP+  LH +  DLS LRVIGAR F+H +  RK L+  A EG +C +  + ++YRV NP    VVESRNVTFIE
Sbjct:  178 ENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 8.930e-42
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   82 EGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKDARK-LEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            E   SEF+ YC  + I   +AATNTPQQIGVSER G+TL  + RC+L D  FP  MW EL +TA YL NR+PH AL   TP+  LH +  DLS LRVIGAR F+H +  RK L+  A EG +C +  + ++YRV NP    VVESRNVTFIE
Sbjct:  178 ENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.280e-41
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   82 EGAVSEFQQYCLETGIIQTFAATNTPQQIGVSERVGRTLCAMVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEADLSHLRVIGARTFLHIKDARK-LEAAA*EGNVCSYSEERKSYRVWNPKTRRVVESRNVTFIE 534
            E   SEF+ YC  + I   +AATNTPQQIGVSER G+TL  + RC+L D  FP  MW EL +TA YL NR+PH AL   TP+  LH +  DLS LRVIGAR F+H +  RK L+  A EG +C +  + ++YRV NP    VVESRNVTFIE
Sbjct:  178 ENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73262.15004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE6.770e-4755.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE4.720e-4655.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ40_9PHAE1.450e-4553.29Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KJN3_9PHAE4.110e-4555.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE4.270e-4555.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE1.040e-4456.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE1.640e-4252.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRJ1_9PHAE6.850e-4254.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE8.930e-4254.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.280e-4154.61Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73262contigH-elongata_contig73262:832..1365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog7425.NV17808-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73262.15004.1prot_H-elongata_contig73262.15004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73262 934..1161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.6061895-UTR-H-elongata_contig73262:831..9331622931134.6061895-UTR-H-elongata_contig73262:831..933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73262 832..933 -
1691679712.49852-UTR-H-elongata_contig73262:831..9331691679712.49852-UTR-H-elongata_contig73262:831..933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73262 832..933 -
1622931134.6334753-UTR-H-elongata_contig73262:1161..13651622931134.6334753-UTR-H-elongata_contig73262:1161..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73262 1162..1365 -
1691679712.5296392-UTR-H-elongata_contig73262:1161..13651691679712.5296392-UTR-H-elongata_contig73262:1161..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73262 1162..1365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.6201642-CDS-H-elongata_contig73262:933..11611622931134.6201642-CDS-H-elongata_contig73262:933..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73262 934..1161 -
1691679712.516224-CDS-H-elongata_contig73262:933..11611691679712.516224-CDS-H-elongata_contig73262:933..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73262 934..1161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73262.15004.1

>prot_H-elongata_contig73262.15004.1 ID=prot_H-elongata_contig73262.15004.1|Name=mRNA_H-elongata_contig73262.15004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MVRCMLADSGFPSFMWWELFMTAVYLKNRTPHKALKMDTPFKMLHGEEAD
LSHLRVIGARTFLHIKDARKLEAAA*
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mRNA from alignment at H-elongata_contig73262:832..1365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73262.15004.1 ID=mRNA_H-elongata_contig73262.15004.1|Name=mRNA_H-elongata_contig73262.15004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig73262:832..1365- (Himanthalia elongata Himel1 dioecious)
GTGTGGCACCGACGGCTGGGTCATCTCCATGTGCAGAGCCTGGATATTGT
ACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGCCGTCTCGGAGT
TCCAGCAGTACTGCTTGGAGACCGGTATTATCCAAACGTTCGCTGCAACC
AACACGCCACAGCAAATCGGTGTGTCCGAACGAGTGGGGAGGACTCTGTG
CGCGATGGTTCGGTGCATGCTCGCAGACAGCGGTTTTCCATCGTTCATGT
GGTGGGAGCTGTTCATGACGGCTGTGTACCTCAAGAATAGAACTCCGCAC
AAGGCGCTTAAGATGGATACGCCTTTCAAGATGCTTCACGGCGAGGAAGC
CGACCTCTCGCACCTTCGCGTTATCGGAGCCAGAACCTTCCTGCACATCA
AGGACGCTAGAAAGCTTGAAGCCGCGGCTTGAGAAGGGAACGTGTGCAGC
TACAGCGAGGAGAGGAAATCCTACCGAGTCTGGAACCCGAAGACTCGCCG
CGTCGTGGAGAGCAGGAACGTCACCTTCATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig73262:832..1365-

>mRNA_H-elongata_contig73262.15004.1 ID=mRNA_H-elongata_contig73262.15004.1|Name=mRNA_H-elongata_contig73262.15004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig73262:832..1365- (Himanthalia elongata Himel1 dioecious)
ATGGTTCGGTGCATGCTCGCAGACAGCGGTTTTCCATCGTTCATGTGGTG
GGAGCTGTTCATGACGGCTGTGTACCTCAAGAATAGAACTCCGCACAAGG
CGCTTAAGATGGATACGCCTTTCAAGATGCTTCACGGCGAGGAAGCCGAC
CTCTCGCACCTTCGCGTTATCGGAGCCAGAACCTTCCTGCACATCAAGGA
CGCTAGAAAGCTTGAAGCCGCGGCTTGAATGGTTCGGTGCATGCTCGCAG
ACAGCGGTTTTCCATCGTTCATGTGGTGGGAGCTGTTCATGACGGCTGTG
TACCTCAAGAATAGAACTCCGCACAAGGCGCTTAAGATGGATACGCCTTT
CAAGATGCTTCACGGCGAGGAAGCCGACCTCTCGCACCTTCGCGTTATCG
GAGCCAGAACCTTCCTGCACATCAAGGACGCTAGAAAGCTTGAAGCCGCG
GCTTGA
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