prot_H-elongata_contig72795.14956.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72795.14956.1
Unique Nameprot_H-elongata_contig72795.14956.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
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BLAST of mRNA_H-elongata_contig72795.14956.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.580e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:   44 TKRRTFSTTLPSSAGVQGLRALVEPGLLGGVDPVWLHQVFTG 85
            T R +     PS++G +GL+A+V+PG++ GVDP WLHQV TG
Sbjct:   43 TSRSSAPAARPSASGARGLQAMVDPGMMHGVDPAWLHQVLTG 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72795.14956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC7_ECTSI5.580e-652.38Alb3 homolog, thylakoidal inner membrane insertase... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..89
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72795contigH-elongata_contig72795:760..1513 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72795.14956.1mRNA_H-elongata_contig72795.14956.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72795 760..2140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72795.14956.1 ID=prot_H-elongata_contig72795.14956.1|Name=mRNA_H-elongata_contig72795.14956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
STLYSLFSYIVVRSVHLVFLGYGRGSWLAVLSSSLTVGCATTATKRRTFS
TTLPSSAGVQGLRALVEPGLLGGVDPVWLHQVFTGEEGA*
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