mRNA_H-elongata_contig72795.14956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72795.14956.1
Unique NamemRNA_H-elongata_contig72795.14956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72795.14956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72795contigH-elongata_contig72795:760..2140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlb3 homolog, thylakoidal inner membrane insertase
Ec32 orthologEc-14_004480.1
Exons2
Model size899
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72795.14956.1prot_H-elongata_contig72795.14956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72795 760..1513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.1148481-CDS-H-elongata_contig72795:759..9221622931130.1148481-CDS-H-elongata_contig72795:759..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72795 760..922 +
1691679710.447408-CDS-H-elongata_contig72795:759..9221691679710.447408-CDS-H-elongata_contig72795:759..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72795 760..922 +
1622931130.1322713-CDS-H-elongata_contig72795:1406..15131622931130.1322713-CDS-H-elongata_contig72795:1406..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72795 1407..1513 +
1691679710.4571033-CDS-H-elongata_contig72795:1406..15131691679710.4571033-CDS-H-elongata_contig72795:1406..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72795 1407..1513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.1527758-UTR-H-elongata_contig72795:1513..21401622931130.1527758-UTR-H-elongata_contig72795:1513..2140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72795 1514..2140 +
1691679710.4670756-UTR-H-elongata_contig72795:1513..21401691679710.4670756-UTR-H-elongata_contig72795:1513..2140Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72795 1514..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72795.14956.1

>prot_H-elongata_contig72795.14956.1 ID=prot_H-elongata_contig72795.14956.1|Name=mRNA_H-elongata_contig72795.14956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
STLYSLFSYIVVRSVHLVFLGYGRGSWLAVLSSSLTVGCATTATKRRTFS
TTLPSSAGVQGLRALVEPGLLGGVDPVWLHQVFTGEEGA*
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mRNA from alignment at H-elongata_contig72795:760..2140+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72795.14956.1 ID=mRNA_H-elongata_contig72795.14956.1|Name=mRNA_H-elongata_contig72795.14956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1381bp|location=Sequence derived from alignment at H-elongata_contig72795:760..2140+ (Himanthalia elongata Himel1 dioecious)
TCTACTCTGTATTCTCTTTTTTCGTACATTGTGGTACGGTCAGTGCATCT
CGTTTTTTTAGGCTACGGCCGAGGGAGTTGGCTGGCCGTGTTATCATCAT
CGCTGACGGTGGGGTGCGCTACTACGGCCACCAAGCGTAGAACCTTCAGC
ACTACCCTACCCTGTACGAATAATTCGTTAAGCTGATGATGTTGTGCGGG
GGGGGGCGGGGGTGGGGGGCCAATGCTATGGATATCCCTGGAAGTACAGG
CAAAGGCAGTGCCTGTAGAGATCGTTGGCAGGGGAGGCTACTACCATATA
GTAAATATATATTCTCGCGCTCAATGAGCGAAGGTTAGTTAGGGTACTGT
ACTCGTCATTTGCTCTGTAGCTTTAGTAAGATGAAAATTAAAGTGATGAC
TGTGATTACCGCGGTTGACGACGCCGCAATTTAGAGTTCAGACAGCAGAG
AGACAGCGGTACGTAGTGTACCGCTGCGCTCACGCCAAAATATAATGTTG
GGAATACCAACTCTTGATCCACCCTTGACCGTTTTTTGTTTTTGTTTTTT
TTCGACCGAAGCCGGCCGCGTACGCTTCATACTAATAGTGCCCGCCGTGC
ATCACCCCTTTGTTGCTGTGCTCCATCTTCGCGTAATTGGACTGAAGCAT
CCGCAGGAGTGCAGGGACTGCGGGCATTGGTGGAGCCAGGGTTGTTAGGC
GGGGTGGACCCTGTGTGGCTGCACCAGGTCTTCACAGGTGAGGAAGGAGC
GTGAACGTGCTTAATGTTCGTAACTGTAGTAACATAATTTTTCATTAGGT
GTTACGCACCGGGGTTTCGCCACCATTCGGAGGCCGCATATTTTGGCTAC
AGCACGACCATCGCCGGGTGGCGAGCGACCTCATAGCGACAGGCCAGACT
ACCCCCTACACTTATCCGTACCAGTCGGTGGCGACTTGGAACGATTTAGC
AATCGACGCTGATACGTGGTATTTAAGGGAAGACAGTCTGCGAAATTGGC
CATGCCAGGGTGCCACTCTAATATGGACACGAAGTTGCTGGTGATGGGCC
TCGAACCTTGGGCTCTCGGCGGCCCTAGCCGCCTCTCCCTCCAAAAAAAA
CCCATCTTGGATGTGAAAATCCTAGCGGACCTATCTCCAATCACGAAACC
TGCGAATCTTATTGCTTGTGCGGACGGAGAAGCGCATCGGATCTGATTTT
TTTCGCTCGGTATGCTTGATCATGGATGAGTTATCCGTCTTCCAGAGGAT
GCGTGGTCAATAGTTAAACAGCTACAGCATGCAAACCTTGAAAACGCGTC
CCGTCCCGTCCCCTCCCTTCCCCTCCGCGCGCAATCGAGCAACCTTAATT
CGAATCGTGGCTTGAGATAGCGAGTTAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig72795:760..2140+

>mRNA_H-elongata_contig72795.14956.1 ID=mRNA_H-elongata_contig72795.14956.1|Name=mRNA_H-elongata_contig72795.14956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig72795:760..2140+ (Himanthalia elongata Himel1 dioecious)
TCTACTCTGTATTCTCTTTTTTCGTACATTGTGGTACGGTCAGTGCATCT
CGTTTTTTTAGGCTACGGCCGAGGGAGTTGGCTGGCCGTGTTATCATCAT
CGCTGACGGTGGGGTGCGCTACTACGGCCACCAAGCGTAGAACCTTCAGC
ACTACCCTACCCTTCTACTCTGTATTCTCTTTTTTCGTACATTGTGGTAC
GGTCAGTGCATCTCGTTTTTTTAGGCTACGGCCGAGGGAGTTGGCTGGCC
GTGTTATCATCATCGCTGACGGTGGGGTGCGCTACTACGGCCACCAAGCG
TAGAACCTTCAGCACTACCCTACCCTCATCCGCAGGAGTGCAGGGACTGC
GGGCATTGGTGGAGCCAGGGTTGTTAGGCGGGGTGGACCCTGTGTGGCTG
CACCAGGTCTTCACAGGTGAGGAAGGAGCGTGACATCCGCAGGAGTGCAG
GGACTGCGGGCATTGGTGGAGCCAGGGTTGTTAGGCGGGGTGGACCCTGT
GTGGCTGCACCAGGTCTTCACAGGTGAGGAAGGAGCGTGA
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